Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
COL12A1Q99715 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC12.8□□□□□ -0.36
COL12A1Q99715 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
COL12A1Q99715 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 DBNDD2-207ENST00000372722 1202 ntTSL 3 BASIC12.8□□□□□ -0.36
COL12A1Q99715 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC12.8□□□□□ -0.36
COL12A1Q99715 RN7SL578P-201ENST00000477781 283 ntBASIC12.8□□□□□ -0.36
COL12A1Q99715 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC12.8□□□□□ -0.36
COL12A1Q99715 NAT9-219ENST00000582524 573 ntTSL 4 BASIC12.8□□□□□ -0.36
COL12A1Q99715 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC12.8□□□□□ -0.36
COL12A1Q99715 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
COL12A1Q99715 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC12.8□□□□□ -0.36
COL12A1Q99715 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC12.8□□□□□ -0.36
COL12A1Q99715 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC12.8□□□□□ -0.36
COL12A1Q99715 PCDHA14-201ENST00000506751 2298 ntBASIC12.8□□□□□ -0.36
COL12A1Q99715 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 R3HDM2P2-201ENST00000401880 2116 ntBASIC12.8□□□□□ -0.36
COL12A1Q99715 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC12.8□□□□□ -0.36
COL12A1Q99715 AC006529.1-201ENST00000459978 637 ntBASIC12.8□□□□□ -0.36
COL12A1Q99715 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC12.8□□□□□ -0.36
COL12A1Q99715 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC12.8□□□□□ -0.36
COL12A1Q99715 TRMT112P3-201ENST00000580149 358 ntBASIC12.8□□□□□ -0.36
COL12A1Q99715 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC12.8□□□□□ -0.36
COL12A1Q99715 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC12.8□□□□□ -0.36
COL12A1Q99715 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC12.8□□□□□ -0.36
COL12A1Q99715 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC12.8□□□□□ -0.36
COL12A1Q99715 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC12.8□□□□□ -0.36
COL12A1Q99715 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC12.8□□□□□ -0.36
COL12A1Q99715 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 LIMS1-201ENST00000332345 1235 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 KRT18P36-201ENST00000411618 1276 ntBASIC12.8□□□□□ -0.36
COL12A1Q99715 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC12.8□□□□□ -0.36
COL12A1Q99715 C12orf73-204ENST00000546819 582 ntTSL 4 BASIC12.8□□□□□ -0.36
COL12A1Q99715 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC12.8□□□□□ -0.36
COL12A1Q99715 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC12.8□□□□□ -0.36
COL12A1Q99715 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC12.8□□□□□ -0.36
COL12A1Q99715 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
COL12A1Q99715 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC12.8□□□□□ -0.36
COL12A1Q99715 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC12.79□□□□□ -0.36
COL12A1Q99715 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC12.79□□□□□ -0.36
COL12A1Q99715 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 ETNPPL-206ENST00000510706 1692 ntTSL 2 BASIC12.79□□□□□ -0.36
COL12A1Q99715 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 RN7SKP230-201ENST00000365642 335 ntBASIC12.79□□□□□ -0.36
COL12A1Q99715 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
COL12A1Q99715 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC12.79□□□□□ -0.36
COL12A1Q99715 IGHV1-12-201ENST00000518307 205 ntBASIC12.79□□□□□ -0.36
COL12A1Q99715 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC12.79□□□□□ -0.36
COL12A1Q99715 DERL2-206ENST00000572834 589 ntTSL 3 BASIC12.79□□□□□ -0.36
COL12A1Q99715 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC12.79□□□□□ -0.36
COL12A1Q99715 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC12.79□□□□□ -0.36
COL12A1Q99715 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC12.79□□□□□ -0.36
COL12A1Q99715 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
COL12A1Q99715 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC12.79□□□□□ -0.36
COL12A1Q99715 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC12.79□□□□□ -0.36
COL12A1Q99715 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC12.79□□□□□ -0.36
COL12A1Q99715 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC12.79□□□□□ -0.36
COL12A1Q99715 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC12.79□□□□□ -0.36
COL12A1Q99715 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC12.79□□□□□ -0.36
COL12A1Q99715 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC12.79□□□□□ -0.36
COL12A1Q99715 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC12.79□□□□□ -0.36
COL12A1Q99715 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
COL12A1Q99715 MBP-201ENST00000354542 575 ntTSL 2 BASIC12.79□□□□□ -0.36
COL12A1Q99715 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
COL12A1Q99715 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC12.79□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms