Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC004461.2-201ENST00000629517 803 ntBASIC15.95■□□□□ 0.14
LIG3P49916 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.95■□□□□ 0.14
LIG3P49916 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
LIG3P49916 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
LIG3P49916 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC15.95■□□□□ 0.14
LIG3P49916 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
LIG3P49916 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIG3P49916 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
LIG3P49916 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC15.95■□□□□ 0.14
LIG3P49916 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LIG3P49916 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
LIG3P49916 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIG3P49916 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LIG3P49916 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LIG3P49916 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC15.94■□□□□ 0.14
LIG3P49916 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.94■□□□□ 0.14
LIG3P49916 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC15.94■□□□□ 0.14
LIG3P49916 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC15.94■□□□□ 0.14
LIG3P49916 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC15.94■□□□□ 0.14
LIG3P49916 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
LIG3P49916 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
LIG3P49916 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
LIG3P49916 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.94■□□□□ 0.14
LIG3P49916 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC15.94■□□□□ 0.14
LIG3P49916 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.94■□□□□ 0.14
LIG3P49916 COX20P2-201ENST00000452636 358 ntBASIC15.94■□□□□ 0.14
LIG3P49916 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC15.94■□□□□ 0.14
LIG3P49916 SPDYE18-201ENST00000510091 1050 ntBASIC15.94■□□□□ 0.14
LIG3P49916 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC15.94■□□□□ 0.14
LIG3P49916 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.94■□□□□ 0.14
LIG3P49916 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC15.94■□□□□ 0.14
LIG3P49916 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.94■□□□□ 0.14
LIG3P49916 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.94■□□□□ 0.14
LIG3P49916 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
LIG3P49916 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC15.94■□□□□ 0.14
LIG3P49916 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC15.94■□□□□ 0.14
LIG3P49916 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.94■□□□□ 0.14
LIG3P49916 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.94■□□□□ 0.14
LIG3P49916 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
LIG3P49916 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
LIG3P49916 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.93■□□□□ 0.14
LIG3P49916 PDE1C-205ENST00000396191 2952 ntAPPRIS ALT1 TSL 2 BASIC15.93■□□□□ 0.14
LIG3P49916 NFATC2-203ENST00000414705 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC15.93■□□□□ 0.14
LIG3P49916 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 C19orf57-204ENST00000586783 2454 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
LIG3P49916 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.93■□□□□ 0.14
LIG3P49916 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.93■□□□□ 0.14
LIG3P49916 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
LIG3P49916 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 PIN1P1-201ENST00000412108 996 ntBASIC15.93■□□□□ 0.14
LIG3P49916 GNAQP1-201ENST00000444815 1067 ntBASIC15.93■□□□□ 0.14
LIG3P49916 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.93■□□□□ 0.14
LIG3P49916 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC15.93■□□□□ 0.14
LIG3P49916 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.93■□□□□ 0.14
LIG3P49916 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.93■□□□□ 0.14
LIG3P49916 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC15.93■□□□□ 0.14
LIG3P49916 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC15.93■□□□□ 0.14
LIG3P49916 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC15.93■□□□□ 0.14
LIG3P49916 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.93■□□□□ 0.14
LIG3P49916 AC074044.1-201ENST00000609673 707 ntBASIC15.93■□□□□ 0.14
LIG3P49916 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.93■□□□□ 0.14
LIG3P49916 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
LIG3P49916 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.93■□□□□ 0.14
LIG3P49916 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC15.93■□□□□ 0.14
LIG3P49916 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.93■□□□□ 0.14
LIG3P49916 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms