Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AC116165.1-201ENST00000611806 668 ntBASIC14.7□□□□□ -0.06
VPS4AQ9UN37 AC004790.1-201ENST00000612686 536 ntBASIC14.7□□□□□ -0.06
VPS4AQ9UN37 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 AC004461.2-201ENST00000629517 803 ntBASIC14.7□□□□□ -0.06
VPS4AQ9UN37 AL033527.5-202ENST00000641632 1098 ntBASIC14.7□□□□□ -0.06
VPS4AQ9UN37 AL109936.8-201ENST00000641772 604 ntBASIC14.7□□□□□ -0.06
VPS4AQ9UN37 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 TNN-203ENST00000622870 3719 ntTSL 5 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
VPS4AQ9UN37 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 AC008735.3-201ENST00000596646 500 ntBASIC14.69□□□□□ -0.06
VPS4AQ9UN37 TMEM261P1-201ENST00000604899 340 ntBASIC14.69□□□□□ -0.06
VPS4AQ9UN37 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 AL390755.1-201ENST00000623716 2027 ntBASIC14.69□□□□□ -0.06
VPS4AQ9UN37 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
VPS4AQ9UN37 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 GHSR-202ENST00000427970 912 ntBASIC14.68□□□□□ -0.06
VPS4AQ9UN37 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 SNX29P1-201ENST00000548357 1007 ntBASIC14.68□□□□□ -0.06
VPS4AQ9UN37 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.68□□□□□ -0.06
VPS4AQ9UN37 AC015910.1-201ENST00000579400 975 ntBASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms