Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
SCN1BQ07699 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
SCN1BQ07699 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
SCN1BQ07699 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC13.52□□□□□ -0.25
SCN1BQ07699 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC13.52□□□□□ -0.25
SCN1BQ07699 RNF34-208ENST00000555076 593 ntTSL 3 BASIC13.52□□□□□ -0.25
SCN1BQ07699 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC13.52□□□□□ -0.25
SCN1BQ07699 AC061975.2-201ENST00000581722 295 ntBASIC13.52□□□□□ -0.25
SCN1BQ07699 MTDHP5-201ENST00000598980 586 ntBASIC13.52□□□□□ -0.25
SCN1BQ07699 C20orf181-201ENST00000623918 480 ntBASIC13.52□□□□□ -0.25
SCN1BQ07699 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SCN1BQ07699 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC13.52□□□□□ -0.25
SCN1BQ07699 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SCN1BQ07699 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
SCN1BQ07699 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
SCN1BQ07699 AL691432.1-201ENST00000596308 1422 ntBASIC13.52□□□□□ -0.25
SCN1BQ07699 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
SCN1BQ07699 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SCN1BQ07699 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC13.52□□□□□ -0.25
SCN1BQ07699 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
SCN1BQ07699 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC13.52□□□□□ -0.25
SCN1BQ07699 AC015818.8-201ENST00000587907 1519 ntBASIC13.52□□□□□ -0.25
SCN1BQ07699 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
SCN1BQ07699 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SCN1BQ07699 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
SCN1BQ07699 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
SCN1BQ07699 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.25
SCN1BQ07699 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SCN1BQ07699 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
SCN1BQ07699 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC13.52□□□□□ -0.25
SCN1BQ07699 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
SCN1BQ07699 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SCN1BQ07699 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC13.52□□□□□ -0.25
SCN1BQ07699 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
SCN1BQ07699 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
SCN1BQ07699 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.25
SCN1BQ07699 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC13.52□□□□□ -0.25
SCN1BQ07699 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
SCN1BQ07699 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SCN1BQ07699 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SCN1BQ07699 AL139385.1-201ENST00000611744 3272 ntBASIC13.51□□□□□ -0.25
SCN1BQ07699 TNK1-207ENST00000576812 3023 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SCN1BQ07699 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
SCN1BQ07699 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC13.51□□□□□ -0.25
SCN1BQ07699 RGS9-210ENST00000635833 2308 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
SCN1BQ07699 AC018442.1-201ENST00000421439 2061 ntBASIC13.51□□□□□ -0.25
SCN1BQ07699 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC13.51□□□□□ -0.25
SCN1BQ07699 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SCN1BQ07699 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC13.51□□□□□ -0.25
SCN1BQ07699 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC13.51□□□□□ -0.25
SCN1BQ07699 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC13.51□□□□□ -0.25
SCN1BQ07699 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SCN1BQ07699 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.51□□□□□ -0.25
SCN1BQ07699 BNIP3P1-202ENST00000550043 1585 ntBASIC13.51□□□□□ -0.25
SCN1BQ07699 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC13.51□□□□□ -0.25
SCN1BQ07699 SLC39A8-203ENST00000424970 4032 ntTSL 2 BASIC13.51□□□□□ -0.25
SCN1BQ07699 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
SCN1BQ07699 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
SCN1BQ07699 PMP22-202ENST00000395936 816 ntTSL 3 BASIC13.51□□□□□ -0.25
SCN1BQ07699 FABP5-202ENST00000396359 986 ntTSL 5 BASIC13.51□□□□□ -0.25
SCN1BQ07699 MCCD1P2-201ENST00000423228 335 ntBASIC13.51□□□□□ -0.25
SCN1BQ07699 HTR5BP-201ENST00000430851 1154 ntBASIC13.51□□□□□ -0.25
SCN1BQ07699 SPCS2P4-201ENST00000436160 681 ntBASIC13.51□□□□□ -0.25
SCN1BQ07699 AL592309.1-201ENST00000443127 649 ntBASIC13.51□□□□□ -0.25
SCN1BQ07699 CEND1P1-201ENST00000451006 455 ntBASIC13.51□□□□□ -0.25
SCN1BQ07699 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SCN1BQ07699 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC13.51□□□□□ -0.25
SCN1BQ07699 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC13.51□□□□□ -0.25
SCN1BQ07699 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC13.51□□□□□ -0.25
SCN1BQ07699 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
SCN1BQ07699 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
SCN1BQ07699 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SCN1BQ07699 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SCN1BQ07699 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.51□□□□□ -0.25
SCN1BQ07699 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
SCN1BQ07699 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
SCN1BQ07699 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
SCN1BQ07699 CDH3-201ENST00000264012 4929 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
SCN1BQ07699 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
SCN1BQ07699 VPS52-212ENST00000445902 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SCN1BQ07699 SATB2-201ENST00000260926 5318 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SCN1BQ07699 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC13.5□□□□□ -0.25
SCN1BQ07699 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
SCN1BQ07699 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SCN1BQ07699 GPR132-202ENST00000392585 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
SCN1BQ07699 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
SCN1BQ07699 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
SCN1BQ07699 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SCN1BQ07699 HGNC:18790-201ENST00000397958 2650 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
SCN1BQ07699 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
SCN1BQ07699 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
SCN1BQ07699 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC13.5□□□□□ -0.25
SCN1BQ07699 ZBTB45P2-201ENST00000452245 1531 ntBASIC13.5□□□□□ -0.25
SCN1BQ07699 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC13.5□□□□□ -0.25
SCN1BQ07699 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SCN1BQ07699 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC13.5□□□□□ -0.25
SCN1BQ07699 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
SCN1BQ07699 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
SCN1BQ07699 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC13.5□□□□□ -0.25
SCN1BQ07699 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms