Protein–RNA interactions for Protein: P22362

CCL1, C-C motif chemokine 1, humanhuman

Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL1P22362 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
CCL1P22362 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC12.95□□□□□ -0.34
CCL1P22362 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
CCL1P22362 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC12.94□□□□□ -0.34
CCL1P22362 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC12.94□□□□□ -0.34
CCL1P22362 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
CCL1P22362 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC12.94□□□□□ -0.34
CCL1P22362 AL359881.3-201ENST00000602640 1721 ntBASIC12.94□□□□□ -0.34
CCL1P22362 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC12.94□□□□□ -0.34
CCL1P22362 MYADML-201ENST00000474610 2147 ntBASIC12.94□□□□□ -0.34
CCL1P22362 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC12.94□□□□□ -0.34
CCL1P22362 NSL1-201ENST00000366976 722 ntTSL 2 BASIC12.94□□□□□ -0.34
CCL1P22362 ACKR1-201ENST00000368121 1240 ntBASIC12.94□□□□□ -0.34
CCL1P22362 PGGT1BP2-201ENST00000398621 1028 ntBASIC12.94□□□□□ -0.34
CCL1P22362 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC12.94□□□□□ -0.34
CCL1P22362 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC12.94□□□□□ -0.34
CCL1P22362 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC12.94□□□□□ -0.34
CCL1P22362 RNA5SP421-201ENST00000516864 134 ntBASIC12.94□□□□□ -0.34
CCL1P22362 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC12.94□□□□□ -0.34
CCL1P22362 AC123567.1-201ENST00000548294 1261 ntBASIC12.94□□□□□ -0.34
CCL1P22362 NAA60-208ENST00000570819 833 ntTSL 2 BASIC12.94□□□□□ -0.34
CCL1P22362 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC12.94□□□□□ -0.34
CCL1P22362 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC12.94□□□□□ -0.34
CCL1P22362 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC12.94□□□□□ -0.34
CCL1P22362 AC005252.2-201ENST00000624630 1141 ntBASIC12.94□□□□□ -0.34
CCL1P22362 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC12.94□□□□□ -0.34
CCL1P22362 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
CCL1P22362 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC12.94□□□□□ -0.34
CCL1P22362 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC12.94□□□□□ -0.34
CCL1P22362 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC12.94□□□□□ -0.34
CCL1P22362 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 LINC01230-201ENST00000625222 3017 ntBASIC12.94□□□□□ -0.34
CCL1P22362 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
CCL1P22362 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
CCL1P22362 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CCL1P22362 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCL1P22362 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCL1P22362 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC12.93□□□□□ -0.34
CCL1P22362 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC12.93□□□□□ -0.34
CCL1P22362 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CCL1P22362 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
CCL1P22362 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCL1P22362 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCL1P22362 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC12.93□□□□□ -0.34
CCL1P22362 AL138725.1-201ENST00000407347 1314 ntBASIC12.93□□□□□ -0.34
CCL1P22362 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC12.93□□□□□ -0.34
CCL1P22362 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCL1P22362 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC12.93□□□□□ -0.34
CCL1P22362 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CCL1P22362 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC12.93□□□□□ -0.34
CCL1P22362 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CCL1P22362 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC12.93□□□□□ -0.34
CCL1P22362 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCL1P22362 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCL1P22362 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCL1P22362 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
CCL1P22362 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC12.93□□□□□ -0.34
CCL1P22362 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC12.93□□□□□ -0.34
CCL1P22362 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC12.93□□□□□ -0.34
CCL1P22362 ENPP7P5-201ENST00000541031 1031 ntBASIC12.93□□□□□ -0.34
CCL1P22362 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC12.93□□□□□ -0.34
CCL1P22362 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC12.93□□□□□ -0.34
CCL1P22362 AC138761.1-201ENST00000584393 385 ntBASIC12.93□□□□□ -0.34
CCL1P22362 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
CCL1P22362 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC12.93□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms