Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
SPTA1P02549 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
SPTA1P02549 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
SPTA1P02549 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC13.61□□□□□ -0.23
SPTA1P02549 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
SPTA1P02549 AC244394.1-201ENST00000435000 1665 ntBASIC13.61□□□□□ -0.23
SPTA1P02549 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
SPTA1P02549 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 AC239868.1-201ENST00000369385 493 ntBASIC13.61□□□□□ -0.23
SPTA1P02549 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 MIR648-201ENST00000385046 94 ntBASIC13.61□□□□□ -0.23
SPTA1P02549 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC13.61□□□□□ -0.23
SPTA1P02549 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC13.61□□□□□ -0.23
SPTA1P02549 HPGD-203ENST00000422112 805 ntTSL 2 BASIC13.61□□□□□ -0.23
SPTA1P02549 AL627422.1-201ENST00000434104 580 ntBASIC13.61□□□□□ -0.23
SPTA1P02549 HNRNPA1P42-201ENST00000458678 957 ntBASIC13.61□□□□□ -0.23
SPTA1P02549 RPL18AP3-201ENST00000462885 528 ntBASIC13.61□□□□□ -0.23
SPTA1P02549 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC13.61□□□□□ -0.23
SPTA1P02549 CCNC-217ENST00000523985 958 ntTSL 2 BASIC13.61□□□□□ -0.23
SPTA1P02549 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
SPTA1P02549 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
SPTA1P02549 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC13.61□□□□□ -0.23
SPTA1P02549 AC004686.1-201ENST00000605113 538 ntBASIC13.61□□□□□ -0.23
SPTA1P02549 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC13.61□□□□□ -0.23
SPTA1P02549 AC244250.3-201ENST00000620749 366 ntBASIC13.61□□□□□ -0.23
SPTA1P02549 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
SPTA1P02549 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC13.61□□□□□ -0.23
SPTA1P02549 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
SPTA1P02549 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
SPTA1P02549 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
SPTA1P02549 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC13.6□□□□□ -0.23
SPTA1P02549 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
SPTA1P02549 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC13.6□□□□□ -0.23
SPTA1P02549 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC13.6□□□□□ -0.23
SPTA1P02549 FLII-221ENST00000578558 2377 ntTSL 5 BASIC13.6□□□□□ -0.23
SPTA1P02549 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.6□□□□□ -0.23
SPTA1P02549 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC13.6□□□□□ -0.23
SPTA1P02549 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC13.6□□□□□ -0.23
SPTA1P02549 CD300A-204ENST00000392625 1163 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC13.6□□□□□ -0.23
SPTA1P02549 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC13.6□□□□□ -0.23
SPTA1P02549 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC13.6□□□□□ -0.23
SPTA1P02549 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC13.6□□□□□ -0.23
SPTA1P02549 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC13.6□□□□□ -0.23
SPTA1P02549 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC13.6□□□□□ -0.23
SPTA1P02549 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC13.6□□□□□ -0.23
SPTA1P02549 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC13.6□□□□□ -0.23
SPTA1P02549 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 AL008718.2-201ENST00000609206 1313 ntBASIC13.6□□□□□ -0.23
SPTA1P02549 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
SPTA1P02549 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC13.6□□□□□ -0.23
SPTA1P02549 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC13.6□□□□□ -0.23
SPTA1P02549 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 TKT-202ENST00000423516 2075 ntTSL 2 BASIC13.6□□□□□ -0.23
SPTA1P02549 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC13.6□□□□□ -0.23
SPTA1P02549 AL359258.3-201ENST00000622910 2331 ntBASIC13.6□□□□□ -0.23
SPTA1P02549 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC13.6□□□□□ -0.23
SPTA1P02549 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
SPTA1P02549 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC13.6□□□□□ -0.23
SPTA1P02549 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.6□□□□□ -0.23
SPTA1P02549 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.6□□□□□ -0.23
SPTA1P02549 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 AC010141.1-201ENST00000411585 623 ntBASIC13.6□□□□□ -0.23
SPTA1P02549 HLA-K-203ENST00000430151 1046 ntBASIC13.6□□□□□ -0.23
SPTA1P02549 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC13.6□□□□□ -0.23
SPTA1P02549 DUT-207ENST00000559416 635 ntTSL 2 BASIC13.6□□□□□ -0.23
SPTA1P02549 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
SPTA1P02549 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms