Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 NPPA-201ENST00000376476 728 ntTSL 3 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 ERBB3-202ENST00000411731 1027 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 CDC23-208ENST00000505120 455 ntTSL 3 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 MIR3907-201ENST00000579424 151 ntBASIC15.1■□□□□ 0.01
HMGB4Q8WW32 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC15.1■□□□□ 0.01
HMGB4Q8WW32 AL353726.2-201ENST00000623259 884 ntBASIC15.1■□□□□ 0.01
HMGB4Q8WW32 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 AC009093.2-202ENST00000620513 2079 ntBASIC15.1■□□□□ 0.01
HMGB4Q8WW32 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 AC020910.5-201ENST00000623668 1865 ntBASIC15.1■□□□□ 0.01
HMGB4Q8WW32 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
HMGB4Q8WW32 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 E2F3P2-201ENST00000447755 1422 ntBASIC15.09■□□□□ 0.01
HMGB4Q8WW32 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.09■□□□□ 0.01
HMGB4Q8WW32 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 SNAP91-213ENST00000521485 4521 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 TMEM243-202ENST00000423734 601 ntTSL 2 BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 TMEM198B-204ENST00000484016 896 ntBASIC15.09■□□□□ 0.01
HMGB4Q8WW32 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 HNRNPA1P36-201ENST00000521313 955 ntBASIC15.09■□□□□ 0.01
HMGB4Q8WW32 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 CSH2-206ENST00000560142 749 ntTSL 5 BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 AL136295.7-201ENST00000619226 1200 ntBASIC15.09■□□□□ 0.01
HMGB4Q8WW32 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 SHC1P1-201ENST00000425230 1745 ntBASIC15.09■□□□□ 0.01
HMGB4Q8WW32 AC092850.2-201ENST00000623821 2697 ntBASIC15.09■□□□□ 0.01
HMGB4Q8WW32 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
HMGB4Q8WW32 AC105250.1-201ENST00000509378 2057 ntBASIC15.08■□□□□ 0.01
HMGB4Q8WW32 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
HMGB4Q8WW32 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0.01
HMGB4Q8WW32 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
HMGB4Q8WW32 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
HMGB4Q8WW32 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
HMGB4Q8WW32 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
HMGB4Q8WW32 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
HMGB4Q8WW32 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms