Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL11A1P12107 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL11A1P12107 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL11A1P12107 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC16.75■□□□□ 0.27
COL11A1P12107 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL11A1P12107 AL512430.1-201ENST00000392575 860 ntBASIC16.75■□□□□ 0.27
COL11A1P12107 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL11A1P12107 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC16.75■□□□□ 0.27
COL11A1P12107 RN7SL8P-201ENST00000461771 266 ntBASIC16.75■□□□□ 0.27
COL11A1P12107 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL11A1P12107 FOS-204ENST00000554617 796 ntTSL 2 BASIC16.75■□□□□ 0.27
COL11A1P12107 MIR7845-201ENST00000618396 99 ntBASIC16.75■□□□□ 0.27
COL11A1P12107 COX6A1P2-201ENST00000620597 330 ntBASIC16.75■□□□□ 0.27
COL11A1P12107 AC011491.1-203ENST00000637688 543 ntBASIC16.75■□□□□ 0.27
COL11A1P12107 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
COL11A1P12107 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC16.75■□□□□ 0.27
COL11A1P12107 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
COL11A1P12107 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC16.75■□□□□ 0.27
COL11A1P12107 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.75■□□□□ 0.27
COL11A1P12107 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL11A1P12107 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC16.75■□□□□ 0.27
COL11A1P12107 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC16.75■□□□□ 0.27
COL11A1P12107 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL11A1P12107 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL11A1P12107 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC16.75■□□□□ 0.27
COL11A1P12107 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL11A1P12107 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL11A1P12107 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC16.75■□□□□ 0.27
COL11A1P12107 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
COL11A1P12107 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL11A1P12107 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL11A1P12107 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL11A1P12107 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
COL11A1P12107 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC16.75■□□□□ 0.27
COL11A1P12107 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL11A1P12107 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC16.75■□□□□ 0.27
COL11A1P12107 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.75■□□□□ 0.27
COL11A1P12107 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL11A1P12107 MIR557-201ENST00000385239 98 ntBASIC16.75■□□□□ 0.27
COL11A1P12107 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL11A1P12107 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL11A1P12107 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC16.75■□□□□ 0.27
COL11A1P12107 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC16.75■□□□□ 0.27
COL11A1P12107 AC005632.3-201ENST00000605544 308 ntBASIC16.75■□□□□ 0.27
COL11A1P12107 AC025262.2-201ENST00000623975 1056 ntBASIC16.75■□□□□ 0.27
COL11A1P12107 AC022532.1-201ENST00000624563 1728 ntBASIC16.75■□□□□ 0.27
COL11A1P12107 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC16.75■□□□□ 0.27
COL11A1P12107 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC16.74■□□□□ 0.27
COL11A1P12107 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL11A1P12107 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
COL11A1P12107 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL11A1P12107 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.74■□□□□ 0.27
COL11A1P12107 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.74■□□□□ 0.27
COL11A1P12107 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC16.74■□□□□ 0.27
COL11A1P12107 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL11A1P12107 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC16.74■□□□□ 0.27
COL11A1P12107 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC16.74■□□□□ 0.27
COL11A1P12107 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
COL11A1P12107 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
COL11A1P12107 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL11A1P12107 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL11A1P12107 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
COL11A1P12107 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL11A1P12107 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
COL11A1P12107 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.74■□□□□ 0.27
COL11A1P12107 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL11A1P12107 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL11A1P12107 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
COL11A1P12107 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
COL11A1P12107 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC16.74■□□□□ 0.27
COL11A1P12107 RPSAP15-201ENST00000448168 861 ntBASIC16.74■□□□□ 0.27
COL11A1P12107 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC16.74■□□□□ 0.27
COL11A1P12107 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL11A1P12107 CCNC-217ENST00000523985 958 ntTSL 2 BASIC16.74■□□□□ 0.27
COL11A1P12107 MIR3147-201ENST00000577811 66 ntBASIC16.74■□□□□ 0.27
COL11A1P12107 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
COL11A1P12107 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
COL11A1P12107 AC105917.1-201ENST00000506637 2539 ntBASIC16.74■□□□□ 0.27
COL11A1P12107 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
COL11A1P12107 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL11A1P12107 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL11A1P12107 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL11A1P12107 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL11A1P12107 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC16.74■□□□□ 0.27
COL11A1P12107 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL11A1P12107 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC16.74■□□□□ 0.27
COL11A1P12107 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC16.74■□□□□ 0.27
COL11A1P12107 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL11A1P12107 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL11A1P12107 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL11A1P12107 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL11A1P12107 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL11A1P12107 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL11A1P12107 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
COL11A1P12107 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL11A1P12107 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL11A1P12107 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
COL11A1P12107 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.73■□□□□ 0.27
COL11A1P12107 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
COL11A1P12107 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms