Protein–RNA interactions for Protein: Q9Y4Z0

LSM4, U6 snRNA-associated Sm-like protein LSm4, humanhuman

Known RBP Predictions only

Length 139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4Q9Y4Z0 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC18.34■□□□□ 0.53
LSM4Q9Y4Z0 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM4Q9Y4Z0 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LSM4Q9Y4Z0 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LSM4Q9Y4Z0 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM4Q9Y4Z0 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC18.34■□□□□ 0.53
LSM4Q9Y4Z0 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LSM4Q9Y4Z0 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC18.33■□□□□ 0.53
LSM4Q9Y4Z0 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LSM4Q9Y4Z0 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LSM4Q9Y4Z0 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.33■□□□□ 0.53
LSM4Q9Y4Z0 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
LSM4Q9Y4Z0 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC18.33■□□□□ 0.53
LSM4Q9Y4Z0 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC18.33■□□□□ 0.52
LSM4Q9Y4Z0 BEX3-202ENST00000372634 753 ntTSL 2 BASIC18.33■□□□□ 0.52
LSM4Q9Y4Z0 YBX1P4-201ENST00000392794 808 ntBASIC18.33■□□□□ 0.52
LSM4Q9Y4Z0 AC009299.2-201ENST00000482477 511 ntBASIC18.33■□□□□ 0.52
LSM4Q9Y4Z0 AC018755.3-202ENST00000596210 929 ntBASIC18.33■□□□□ 0.52
LSM4Q9Y4Z0 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LSM4Q9Y4Z0 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LSM4Q9Y4Z0 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LSM4Q9Y4Z0 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
LSM4Q9Y4Z0 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LSM4Q9Y4Z0 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC18.32■□□□□ 0.52
LSM4Q9Y4Z0 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LSM4Q9Y4Z0 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM4Q9Y4Z0 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LSM4Q9Y4Z0 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
LSM4Q9Y4Z0 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC18.32■□□□□ 0.52
LSM4Q9Y4Z0 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM4Q9Y4Z0 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LSM4Q9Y4Z0 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC18.32■□□□□ 0.52
LSM4Q9Y4Z0 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC18.32■□□□□ 0.52
LSM4Q9Y4Z0 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM4Q9Y4Z0 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LSM4Q9Y4Z0 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC18.32■□□□□ 0.52
LSM4Q9Y4Z0 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LSM4Q9Y4Z0 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
LSM4Q9Y4Z0 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
LSM4Q9Y4Z0 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM4Q9Y4Z0 C9orf163-202ENST00000624034 2573 ntBASIC18.31■□□□□ 0.52
LSM4Q9Y4Z0 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM4Q9Y4Z0 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM4Q9Y4Z0 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LSM4Q9Y4Z0 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC18.31■□□□□ 0.52
LSM4Q9Y4Z0 PVT1_1.1-201ENST00000615125 194 ntBASIC18.31■□□□□ 0.52
LSM4Q9Y4Z0 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LSM4Q9Y4Z0 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM4Q9Y4Z0 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LSM4Q9Y4Z0 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM4Q9Y4Z0 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LSM4Q9Y4Z0 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM4Q9Y4Z0 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
LSM4Q9Y4Z0 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
LSM4Q9Y4Z0 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM4Q9Y4Z0 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC18.3■□□□□ 0.52
LSM4Q9Y4Z0 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM4Q9Y4Z0 AL592295.1-201ENST00000400984 884 ntBASIC18.3■□□□□ 0.52
LSM4Q9Y4Z0 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC18.3■□□□□ 0.52
LSM4Q9Y4Z0 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC18.3■□□□□ 0.52
LSM4Q9Y4Z0 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
LSM4Q9Y4Z0 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM4Q9Y4Z0 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM4Q9Y4Z0 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM4Q9Y4Z0 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
LSM4Q9Y4Z0 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LSM4Q9Y4Z0 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC18.29■□□□□ 0.52
LSM4Q9Y4Z0 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LSM4Q9Y4Z0 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LSM4Q9Y4Z0 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
LSM4Q9Y4Z0 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC18.29■□□□□ 0.52
LSM4Q9Y4Z0 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
LSM4Q9Y4Z0 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
LSM4Q9Y4Z0 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
LSM4Q9Y4Z0 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC18.29■□□□□ 0.52
LSM4Q9Y4Z0 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
LSM4Q9Y4Z0 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM4Q9Y4Z0 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM4Q9Y4Z0 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM4Q9Y4Z0 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
LSM4Q9Y4Z0 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC18.28■□□□□ 0.52
LSM4Q9Y4Z0 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM4Q9Y4Z0 HES6-204ENST00000409182 863 ntTSL 2 BASIC18.28■□□□□ 0.52
LSM4Q9Y4Z0 MIR4508-201ENST00000584178 70 ntBASIC18.28■□□□□ 0.52
LSM4Q9Y4Z0 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM4Q9Y4Z0 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
LSM4Q9Y4Z0 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC18.28■□□□□ 0.52
LSM4Q9Y4Z0 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
LSM4Q9Y4Z0 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
LSM4Q9Y4Z0 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LSM4Q9Y4Z0 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC18.27■□□□□ 0.52
LSM4Q9Y4Z0 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.52
LSM4Q9Y4Z0 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LSM4Q9Y4Z0 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LSM4Q9Y4Z0 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC18.27■□□□□ 0.52
LSM4Q9Y4Z0 IDNK-203ENST00000405990 629 ntTSL 2 BASIC18.27■□□□□ 0.52
LSM4Q9Y4Z0 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC18.27■□□□□ 0.52
LSM4Q9Y4Z0 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC18.27■□□□□ 0.52
LSM4Q9Y4Z0 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LSM4Q9Y4Z0 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms