Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC6.57□□□□□ -1.363e-9■■■■■ 206.8
SF3B1O75533 STOML2-203ENST00000487490 360 ntTSL 26.57□□□□□ -1.363e-9■■■■■ 206.8
SF3B1O75533 LIG3-206ENST00000586058 581 ntTSL 26.55□□□□□ -1.363e-9■■■■■ 206.8
SF3B1O75533 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC6.51□□□□□ -1.373e-9■■■■■ 206.8
SF3B1O75533 HAUS4-219ENST00000556421 851 ntTSL 26.41□□□□□ -1.383e-9■■■■■ 206.8
SF3B1O75533 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.31□□□□□ -1.43e-9■■■■■ 206.8
SF3B1O75533 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC6.16□□□□□ -1.423e-9■■■■■ 206.8
SF3B1O75533 NUP54-215ENST00000514313 537 ntTSL 26.12□□□□□ -1.433e-9■■■■■ 206.8
SF3B1O75533 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.433e-9■■■■■ 206.8
SF3B1O75533 TNKS-203ENST00000517770 574 ntTSL 45.96□□□□□ -1.463e-9■■■■■ 206.8
SF3B1O75533 CSNK1G1-213ENST00000635270 830 ntTSL 55.94□□□□□ -1.465e-8■■■■■ 206.8
SF3B1O75533 ZEB1-220ENST00000560909 564 ntTSL 45.83□□□□□ -1.483e-9■■■■■ 206.8
SF3B1O75533 SH3BGR-207ENST00000447939 512 ntTSL 25.78□□□□□ -1.483e-9■■■■■ 206.8
SF3B1O75533 INTS9-218ENST00000523436 929 ntTSL 35.56□□□□□ -1.523e-9■■■■■ 206.8
SF3B1O75533 ZFYVE16-211ENST00000512558 4496 ntTSL 25.55□□□□□ -1.523e-9■■■■■ 206.8
SF3B1O75533 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC5.49□□□□□ -1.533e-9■■■■■ 206.8
SF3B1O75533 AL669831.3-209ENST00000440200 413 ntTSL 55.43□□□□□ -1.543e-9■■■■■ 206.8
SF3B1O75533 PPHLN1-211ENST00000547696 680 ntTSL 35.41□□□□□ -1.543e-9■■■■■ 206.8
SF3B1O75533 INTS9-206ENST00000520184 559 ntTSL 45.4□□□□□ -1.553e-9■■■■■ 206.8
SF3B1O75533 OXR1-208ENST00000517455 607 ntTSL 55.35□□□□□ -1.552e-6■■■■■ 206.8
SF3B1O75533 UBA6-AS1-207ENST00000514109 786 ntTSL 35.31□□□□□ -1.565e-8■■■■■ 206.8
SF3B1O75533 PROS1-204ENST00000472684 562 ntTSL 55.13□□□□□ -1.593e-9■■■■■ 206.8
SF3B1O75533 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.96□□□□□ -1.613e-9■■■■■ 206.8
SF3B1O75533 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC4.94□□□□□ -1.622e-6■■■■■ 206.8
SF3B1O75533 NPEPPS-204ENST00000525037 1406 ntTSL 54.92□□□□□ -1.623e-9■■■■■ 206.8
SF3B1O75533 DDX10-206ENST00000534221 870 ntTSL 24.88□□□□□ -1.633e-9■■■■■ 206.8
SF3B1O75533 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.87□□□□□ -1.635e-8■■■■■ 206.8
SF3B1O75533 CHD1-204ENST00000505982 758 ntTSL 34.85□□□□□ -1.633e-9■■■■■ 206.8
SF3B1O75533 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.82□□□□□ -1.643e-9■■■■■ 206.8
SF3B1O75533 TBC1D31-205ENST00000518684 605 ntTSL 34.73□□□□□ -1.653e-9■■■■■ 206.8
SF3B1O75533 ZFYVE16-207ENST00000510995 2873 ntTSL 1 (best)4.58□□□□□ -1.683e-9■■■■■ 206.8
SF3B1O75533 COG5-206ENST00000468350 581 ntTSL 34.46□□□□□ -1.692e-17■■■■■ 206.8
SF3B1O75533 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC4.42□□□□□ -1.73e-9■■■■■ 206.8
SF3B1O75533 ERCC6L2-208ENST00000479391 2849 ntTSL 1 (best)4.41□□□□□ -1.73e-9■■■■■ 206.8
SF3B1O75533 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC4.32□□□□□ -1.723e-9■■■■■ 206.8
SF3B1O75533 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.733e-9■■■■■ 206.8
SF3B1O75533 ZEB1-207ENST00000493835 683 ntTSL 54.22□□□□□ -1.733e-9■■■■■ 206.8
SF3B1O75533 DAPK1-218ENST00000497743 341 ntTSL 24.21□□□□□ -1.743e-9■■■■■ 206.8
SF3B1O75533 ERCC6L2-207ENST00000470362 468 ntTSL 34.16□□□□□ -1.743e-9■■■■■ 206.8
SF3B1O75533 INTS9-209ENST00000520831 498 ntTSL 24.02□□□□□ -1.773e-9■■■■■ 206.8
SF3B1O75533 VPS37A-205ENST00000519515 266 ntTSL 34□□□□□ -1.773e-9■■■■■ 206.8
SF3B1O75533 DDX10-202ENST00000524979 794 ntTSL 33.93□□□□□ -1.783e-9■■■■■ 206.8
SF3B1O75533 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC3.71□□□□□ -1.812e-6■■■■■ 206.8
SF3B1O75533 ERCC6L2-203ENST00000402838 546 ntTSL 43.59□□□□□ -1.833e-9■■■■■ 206.8
SF3B1O75533 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.54□□□□□ -1.843e-9■■■■■ 206.8
SF3B1O75533 RPS3A-214ENST00000515818 572 ntTSL 53.4□□□□□ -1.872e-17■■■■■ 206.8
SF3B1O75533 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.31□□□□□ -1.882e-6■■■■■ 206.8
SF3B1O75533 UTRN-213ENST00000628146 597 ntTSL 23.31□□□□□ -1.883e-9■■■■■ 206.8
SF3B1O75533 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.22□□□□□ -1.892e-6■■■■■ 206.8
SF3B1O75533 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.893e-9■■■■■ 206.8
SF3B1O75533 AL669831.3-203ENST00000419394 491 ntTSL 53.19□□□□□ -1.93e-9■■■■■ 206.8
SF3B1O75533 RPAP2-201ENST00000477322 755 ntTSL 23□□□□□ -1.931e-11■■■■■ 206.8
SF3B1O75533 ZEB1-224ENST00000606161 482 ntTSL 32.98□□□□□ -1.933e-9■■■■■ 206.8
SF3B1O75533 ASPH-213ENST00000518441 781 ntTSL 22.95□□□□□ -1.943e-9■■■■■ 206.8
SF3B1O75533 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC2.93□□□□□ -1.943e-9■■■■■ 206.8
SF3B1O75533 ZEB1-225ENST00000606671 571 ntTSL 42.88□□□□□ -1.953e-9■■■■■ 206.8
SF3B1O75533 AMZ2P1-203ENST00000565833 850 ntBASIC2.85□□□□□ -1.953e-9■■■■■ 206.8
SF3B1O75533 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.58□□□□□ -22e-6■■■■■ 206.8
SF3B1O75533 CHD1-207ENST00000511628 599 ntTSL 32.41□□□□□ -2.023e-9■■■■■ 206.8
SF3B1O75533 PMS1-203ENST00000409593 1668 ntTSL 1 (best)2.28□□□□□ -2.043e-9■■■■■ 206.8
SF3B1O75533 HPF1-202ENST00000506125 489 ntTSL 22.19□□□□□ -2.063e-9■■■■■ 206.8
SF3B1O75533 ATP5H-203ENST00000538432 533 ntTSL 31.99□□□□□ -2.093e-9■■■■■ 206.8
SF3B1O75533 COG5-204ENST00000462342 577 ntTSL 31.98□□□□□ -2.092e-17■■■■■ 206.8
SF3B1O75533 ASPH-216ENST00000519678 536 ntTSL 31.85□□□□□ -2.113e-9■■■■■ 206.8
SF3B1O75533 TBC1D31-215ENST00000524307 3101 ntTSL 21.75□□□□□ -2.133e-9■■■■■ 206.8
SF3B1O75533 SLCO3A1-205ENST00000555111 427 ntTSL 31□□□□□ -2.253e-9■■■■■ 206.8
SF3B1O75533 AC005537.1-209ENST00000631050 427 ntTSL 50.11□□□□□ -2.393e-9■■■■■ 206.8
SF3B1O75533 USP3-201ENST00000268049 5311 ntTSL 5 BASIC8.19□□□□□ -1.12e-8■■■■■ 205.3
SF3B1O75533 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC7.2□□□□□ -1.262e-6■■■■■ 205
SF3B1O75533 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.61□□□□□ -1.352e-6■■■■■ 205
SF3B1O75533 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.38■□□□□ 0.372e-7■■■■■ 204.7
SF3B1O75533 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.94■□□□□ 0.32e-7■■■■■ 204.7
SF3B1O75533 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC14.61□□□□□ -0.072e-7■■■■■ 204.7
SF3B1O75533 PDSS2-202ENST00000369037 3540 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.662e-7■■■■■ 204.7
SF3B1O75533 USP3-221ENST00000561442 542 ntTSL 515.53■□□□□ 0.081e-6■■■■■ 204.4
SF3B1O75533 FAM53A-206ENST00000489029 628 ntTSL 318.95■□□□□ 0.622e-7■■■■■ 204
SF3B1O75533 TRIP12-215ENST00000479037 2938 ntTSL 1 (best)14.55□□□□□ -0.082e-6■■■■■ 203.5
SF3B1O75533 USP36-210ENST00000588086 3187 ntAPPRIS ALT2 TSL 1 (best)14.97□□□□□ -0.014e-7■■■■■ 203.5
SF3B1O75533 NOL4L-201ENST00000201961 971 ntAPPRIS ALT2 TSL 326.03■■□□□ 1.761e-6■■■■■ 201
SF3B1O75533 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.881e-6■■■■■ 201
SF3B1O75533 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.453e-10■■■■■ 200.5
SF3B1O75533 ATP13A1-210ENST00000491221 937 ntTSL 215.17■□□□□ 0.021e-13■■■■■ 200.5
SF3B1O75533 TRAF2-205ENST00000466107 233 ntTSL 311.84□□□□□ -0.513e-10■■■■■ 200.5
SF3B1O75533 ZNF675-204ENST00000599168 592 ntTSL 2 BASIC7.74□□□□□ -1.173e-10■■■■■ 200.5
SF3B1O75533 DDX54-207ENST00000550016 594 ntTSL 521■□□□□ 0.956e-11■■■■■ 199.8
SF3B1O75533 DDX54-204ENST00000546898 479 ntTSL 317.39■□□□□ 0.376e-11■■■■■ 199.8
SF3B1O75533 DDX54-205ENST00000548786 498 ntTSL 217.22■□□□□ 0.356e-11■■■■■ 199.8
SF3B1O75533 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.176e-7■■■■■ 199.2
SF3B1O75533 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.156e-7■■■■■ 199.2
SF3B1O75533 ELMSAN1-205ENST00000435371 3839 ntTSL 1 (best)14.32□□□□□ -0.126e-7■■■■■ 199.2
SF3B1O75533 ELMSAN1-211ENST00000486739 534 ntTSL 410.73□□□□□ -0.696e-7■■■■■ 199.2
SF3B1O75533 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.686e-7■■■■■ 199.1
SF3B1O75533 AC068580.4-202ENST00000636579 350 ntTSL 316.72■□□□□ 0.273e-8■■■■■ 199.1
SF3B1O75533 AHNAK-207ENST00000531324 579 ntAPPRIS ALT2 TSL 320.38■□□□□ 0.857e-9■■■■■ 198.8
SF3B1O75533 AHNAK-206ENST00000530285 580 ntAPPRIS ALT2 TSL 314.75□□□□□ -0.057e-9■■■■■ 198.8
SF3B1O75533 AHNAK-204ENST00000528508 568 ntAPPRIS ALT2 TSL 414.71□□□□□ -0.057e-9■■■■■ 198.8
SF3B1O75533 STXBP1-204ENST00000494254 563 ntTSL 511.44□□□□□ -0.582e-9■■■■■ 198.2
SF3B1O75533 STXBP1-211ENST00000628638 581 ntTSL 310.73□□□□□ -0.692e-9■■■■■ 198.2
SF3B1O75533 STXBP1-208ENST00000626416 3700 ntTSL 56.73□□□□□ -1.332e-9■■■■■ 198.2
SF3B1O75533 FDXR-212ENST00000580492 553 ntTSL 521.59■■□□□ 1.055e-6■■■■■ 197.5
Retrieved 100 of 46,956 protein–RNA pairs in 295.1 ms