RNA–Protein interactions for RNA: ENST00000409593.5

PMS1-203, Transcript of PMS1 homolog 1, mismatch repair system component, humanhuman

TSL 1 (best)

Gene PMS1, Length 1,668 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS1-203ENST00000409593 AEBP2Q6ZN18 517 aaPredicted RBP23.41■■□□□ 1.34
PMS1-203ENST00000409593 CHIC1Q5VXU3 224 aa22.8■■□□□ 1.24
PMS1-203ENST00000409593 PHF23Q9BUL5 403 aaPredicted RBP20.03■□□□□ 0.8
PMS1-203ENST00000409593 SENP3Q9H4L4 574 aaPredicted RBP19.88■□□□□ 0.77
PMS1-203ENST00000409593 POTEDQ86YR6 584 aa18.64■□□□□ 0.57
PMS1-203ENST00000409593 PLPPR3Q6T4P5 718 aa18.5■□□□□ 0.55
PMS1-203ENST00000409593 FOXD1Q16676 465 aa18.46■□□□□ 0.55
PMS1-203ENST00000409593 ADRA2BP18089 450 aa17.71■□□□□ 0.43
PMS1-203ENST00000409593 PPP6R1Q9UPN7 881 aa17.71■□□□□ 0.42
PMS1-203ENST00000409593 MSH5O43196 834 aa17.56■□□□□ 0.4
PMS1-203ENST00000409593 PIAS4Q8N2W9 510 aaPredicted RBP17.45■□□□□ 0.38
PMS1-203ENST00000409593 PPP4R3CPQ6ZMV5 832 aa16.3■□□□□ 0.2
PMS1-203ENST00000409593 SCAF1Q9H7N4 1312 aaKnown RBP16.2■□□□□ 0.18
PMS1-203ENST00000409593 MAPK8IP2Q13387 824 aaPredicted RBP16.08■□□□□ 0.17
PMS1-203ENST00000409593 KCNA4P22459 653 aa15.86■□□□□ 0.13
PMS1-203ENST00000409593 NCBP3Q53F19 620 aaKnown RBP15.86■□□□□ 0.13
PMS1-203ENST00000409593 CNKSR2Q8WXI2 1034 aa15.85■□□□□ 0.13
PMS1-203ENST00000409593 DMRT2Q9Y5R5 561 aa15.84■□□□□ 0.13
PMS1-203ENST00000409593 NPM3O75607 178 aaKnown RBP15.61■□□□□ 0.09
PMS1-203ENST00000409593 CACNB1Q02641 598 aaPredicted RBP15.57■□□□□ 0.08
PMS1-203ENST00000409593 RNF216Q9NWF9 866 aaPredicted RBP15.54■□□□□ 0.08
PMS1-203ENST00000409593 HOXD11P31277 338 aaPredicted RBP15.48■□□□□ 0.07
PMS1-203ENST00000409593 DCAF8L1A6NGE4 600 aa15.27■□□□□ 0.03
PMS1-203ENST00000409593 SLC4A1APQ9BWU0 796 aaKnown RBP15.11■□□□□ 0.01
PMS1-203ENST00000409593 DNAJC5BQ9UF47 199 aa15.07■□□□□ 0
PMS1-203ENST00000409593 RNF39Q9H2S5 420 aa14.88□□□□□ -0.03
PMS1-203ENST00000409593 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.82□□□□□ -0.044e-6■■□□□ 13.6
PMS1-203ENST00000409593 SLC4A2P04920 1241 aa14.74□□□□□ -0.05
PMS1-203ENST00000409593 EHMT2Q96KQ7 1210 aa14.65□□□□□ -0.06
PMS1-203ENST00000409593 C1QBPQ07021 282 aaKnown RBP14.63□□□□□ -0.07
PMS1-203ENST00000409593 FOXD4L1Q9NU39 408 aa14.61□□□□□ -0.07
PMS1-203ENST00000409593 ZBTB22O15209 634 aa14.58□□□□□ -0.08
PMS1-203ENST00000409593 U3KPZ7 1027 aaPredicted RBP14.54□□□□□ -0.08
PMS1-203ENST00000409593 MYCNP04198 464 aaPredicted RBP14.45□□□□□ -0.1
PMS1-203ENST00000409593 POTEHQ6S545 545 aa14.43□□□□□ -0.1
PMS1-203ENST00000409593 CSRNP3Q8WYN3 585 aa14.43□□□□□ -0.1
PMS1-203ENST00000409593 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.34□□□□□ -0.11
PMS1-203ENST00000409593 HNRNPUL2Q1KMD3 747 aaKnown RBP14.34□□□□□ -0.11
PMS1-203ENST00000409593 SAMD1Q6SPF0 538 aaPredicted RBP14.29□□□□□ -0.12
PMS1-203ENST00000409593 APLP2Q06481 763 aa14.22□□□□□ -0.13
PMS1-203ENST00000409593 SPINK5Q9NQ38 1064 aaPredicted RBP14.17□□□□□ -0.14
PMS1-203ENST00000409593 CAPN15O75808 1086 aa14.15□□□□□ -0.14
PMS1-203ENST00000409593 TRHP20396 242 aaPredicted RBP14.07□□□□□ -0.16
PMS1-203ENST00000409593 ATXN8OSP0DMR3 200 aa14.06□□□□□ -0.16
PMS1-203ENST00000409593 ATF5Q9Y2D1 282 aaPredicted RBP14.06□□□□□ -0.16
PMS1-203ENST00000409593 ZNF219Q9P2Y4 722 aaPredicted RBP14.04□□□□□ -0.16
PMS1-203ENST00000409593 ABCB7O75027 752 aa13.89□□□□□ -0.19
PMS1-203ENST00000409593 DSG3P32926 999 aa13.87□□□□□ -0.19
PMS1-203ENST00000409593 POLA2Q14181 598 aa13.79□□□□□ -0.2
PMS1-203ENST00000409593 ZBTB12Q9Y330 459 aaPredicted RBP13.56□□□□□ -0.24
PMS1-203ENST00000409593 FBLN2P98095 1184 aa13.5□□□□□ -0.25
PMS1-203ENST00000409593 MKRN4PQ13434 485 aaPredicted RBP13.43□□□□□ -0.26
PMS1-203ENST00000409593 OSCARQ8IYS5 282 aa13.35□□□□□ -0.27
PMS1-203ENST00000409593 RBM42Q9BTD8 480 aaKnown RBP13.24□□□□□ -0.29
PMS1-203ENST00000409593 SPDYE2BA6NHP3 402 aa13.18□□□□□ -0.3
PMS1-203ENST00000409593 SPDYE6P0CI01 402 aa13.18□□□□□ -0.3
PMS1-203ENST00000409593 SPDYE2Q495Y8 402 aa13.18□□□□□ -0.3
PMS1-203ENST00000409593 ZNF692Q9BU19 519 aaPredicted RBP13.14□□□□□ -0.31
PMS1-203ENST00000409593 SPDYE4A6NLX3 237 aa13.13□□□□□ -0.31
PMS1-203ENST00000409593 SP7Q8TDD2 431 aaPredicted RBP13.12□□□□□ -0.31
PMS1-203ENST00000409593 FKBP8Q14318 412 aa13.11□□□□□ -0.31
PMS1-203ENST00000409593 CHRDL2Q6WN34 429 aa13.09□□□□□ -0.31
PMS1-203ENST00000409593 AKT1S1Q96B36 256 aa13.05□□□□□ -0.32
PMS1-203ENST00000409593 SSUH2Q9Y2M2 353 aa13.05□□□□□ -0.32
PMS1-203ENST00000409593 PABPN1Q86U42 306 aaKnown RBP eCLIP12.97□□□□□ -0.33
PMS1-203ENST00000409593 REM2Q8IYK8 340 aaPredicted RBP12.93□□□□□ -0.34
PMS1-203ENST00000409593 PROM2Q8N271 834 aa12.83□□□□□ -0.36
PMS1-203ENST00000409593 SPDYE1Q8NFV5 336 aaPredicted RBP12.82□□□□□ -0.36
PMS1-203ENST00000409593 CLEC11AQ9Y240 323 aa12.82□□□□□ -0.36
PMS1-203ENST00000409593 PITPNM1O00562 1244 aa12.8□□□□□ -0.36
PMS1-203ENST00000409593 STAG3Q9UJ98 1225 aa12.71□□□□□ -0.37
PMS1-203ENST00000409593 PRR29P0C7W0 189 aa12.66□□□□□ -0.38
PMS1-203ENST00000409593 FBXO3Q9UK99 471 aa12.63□□□□□ -0.39
PMS1-203ENST00000409593 PIP4P2Q8N4L2 257 aa12.58□□□□□ -0.4
PMS1-203ENST00000409593 HAX1O00165 279 aa12.57□□□□□ -0.4
PMS1-203ENST00000409593 FXR2P51116 673 aaKnown RBP eCLIP12.53□□□□□ -0.4
PMS1-203ENST00000409593 PRKAR2AP13861 404 aaKnown RBP12.49□□□□□ -0.41
PMS1-203ENST00000409593 CHADLQ6NUI6 762 aa12.49□□□□□ -0.41
PMS1-203ENST00000409593 VASPP50552 380 aaPredicted RBP12.47□□□□□ -0.41
PMS1-203ENST00000409593 MIER1Q8N108 512 aa12.47□□□□□ -0.41
PMS1-203ENST00000409593 PLCD3Q8N3E9 789 aa12.47□□□□□ -0.41
PMS1-203ENST00000409593 CREBZFQ9NS37 354 aa12.45□□□□□ -0.42
PMS1-203ENST00000409593 PLEKHG5O94827 1062 aa12.44□□□□□ -0.42
PMS1-203ENST00000409593 EVX2Q03828 476 aa12.33□□□□□ -0.44
PMS1-203ENST00000409593 FARP1Q9Y4F1 1045 aaPredicted RBP12.33□□□□□ -0.44
PMS1-203ENST00000409593 KLHL34Q8N239 644 aa12.31□□□□□ -0.44
PMS1-203ENST00000409593 ZBTB47Q9UFB7 747 aaPredicted RBP12.3□□□□□ -0.44
PMS1-203ENST00000409593 MNX1P50219 401 aaPredicted RBP12.29□□□□□ -0.44
PMS1-203ENST00000409593 LHX8Q68G74 356 aa12.27□□□□□ -0.45
PMS1-203ENST00000409593 IFNLR1Q8IU57 520 aaPredicted RBP12.27□□□□□ -0.45
PMS1-203ENST00000409593 NPM1P06748 294 aaKnown RBP eCLIP12.26□□□□□ -0.45
PMS1-203ENST00000409593 PLSCR2Q9NRY7 297 aa12.22□□□□□ -0.45
PMS1-203ENST00000409593 SPOCK2Q92563 424 aa12.15□□□□□ -0.46
PMS1-203ENST00000409593 CD44P16070 742 aaKnown RBP12.13□□□□□ -0.47
PMS1-203ENST00000409593 C19orf67A6NJJ6 358 aa12.11□□□□□ -0.47
PMS1-203ENST00000409593 NUBP1P53384 320 aa12.11□□□□□ -0.47
PMS1-203ENST00000409593 PAK3O75914 559 aaPredicted RBP12.1□□□□□ -0.47
PMS1-203ENST00000409593 RASEFQ8IZ41 740 aa12.1□□□□□ -0.47
PMS1-203ENST00000409593 TSPYL2Q9H2G4 693 aaPredicted RBP12.09□□□□□ -0.47
PMS1-203ENST00000409593 FAM212AQ96EL1 285 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms