RNA–Protein interactions for RNA: ENST00000550016.5

DDX54-207, Transcript of DEAD-box helicase 54, humanhuman

TSL 5

Gene DDX54, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-207ENST00000550016 NISCHQ9Y2I1 1504 aa46.7■■■■■ 5.07
DDX54-207ENST00000550016 CCDC180Q9P1Z9 1646 aa41.5■■■■■ 4.23
DDX54-207ENST00000550016 ABCC9O60706 1549 aa40.37■■■■■ 4.05
DDX54-207ENST00000550016 DCAF8L2P0C7V8 631 aa38.96■■■■□ 3.83
DDX54-207ENST00000550016 NACADO15069 1562 aa38.95■■■■□ 3.83
DDX54-207ENST00000550016 RB1CC1Q8TDY2 1594 aa38.95■■■■□ 3.83
DDX54-207ENST00000550016 ZCCHC6Q5VYS8 1495 aaKnown RBP38.92■■■■□ 3.82
DDX54-207ENST00000550016 MYO15BQ96JP2 1530 aa38.75■■■■□ 3.79
DDX54-207ENST00000550016 DCAF1Q9Y4B6 1507 aa38.66■■■■□ 3.78
DDX54-207ENST00000550016 UNC13AQ9UPW8 1703 aa38.15■■■■□ 3.7
DDX54-207ENST00000550016 SCRIBQ14160 1630 aa37.83■■■■□ 3.65
DDX54-207ENST00000550016 BICRAQ9NZM4 1560 aa37.76■■■■□ 3.63
DDX54-207ENST00000550016 PABPN1Q86U42 306 aaKnown RBP eCLIP37.75■■■■□ 3.63
DDX54-207ENST00000550016 SHROOM4Q9ULL8 1493 aa37.35■■■■□ 3.57
DDX54-207ENST00000550016 DNAJC5BQ9UF47 199 aa36.89■■■■□ 3.5
DDX54-207ENST00000550016 EIF4G1Q04637 1599 aaKnown RBP36.73■■■■□ 3.47
DDX54-207ENST00000550016 CC2D2AQ9P2K1 1620 aa36.56■■■■□ 3.44
DDX54-207ENST00000550016 CECR2Q9BXF3 1484 aa36.35■■■■□ 3.41
DDX54-207ENST00000550016 SMARCA4P51532 1647 aa36.22■■■■□ 3.39
DDX54-207ENST00000550016 BAZ1AQ9NRL2 1556 aaPredicted RBP36.19■■■■□ 3.38
DDX54-207ENST00000550016 MROH2BQ7Z745 1585 aa35.99■■■■□ 3.35
DDX54-207ENST00000550016 SMARCA2P51531 1590 aa35.94■■■■□ 3.34
DDX54-207ENST00000550016 ATAD2BQ9ULI0 1458 aa35.94■■■■□ 3.34
DDX54-207ENST00000550016 NCAPD3P42695 1498 aa35.91■■■■□ 3.34
DDX54-207ENST00000550016 PEG3Q9GZU2 1588 aa35.85■■■■□ 3.33
DDX54-207ENST00000550016 HMGXB3Q12766 1538 aa35.75■■■■□ 3.31
DDX54-207ENST00000550016 BAZ1BQ9UIG0 1483 aaKnown RBP35.67■■■■□ 3.3
DDX54-207ENST00000550016 WIZO95785 1651 aa35.65■■■■□ 3.3
DDX54-207ENST00000550016 RSF1Q96T23 1441 aaPredicted RBP35.63■■■■□ 3.29
DDX54-207ENST00000550016 TOP2AP11388 1531 aaKnown RBP35.25■■■■□ 3.23
DDX54-207ENST00000550016 NESP48681 1621 aa34.99■■■■□ 3.19
DDX54-207ENST00000550016 LAMC3Q9Y6N6 1575 aa34.96■■■■□ 3.19
DDX54-207ENST00000550016 SUPT5HO00267 1087 aaKnown RBP34.87■■■■□ 3.17
DDX54-207ENST00000550016 CADPSQ9ULU8 1353 aa34.87■■■■□ 3.17
DDX54-207ENST00000550016 CCDC88BA6NC98 1476 aa34.84■■■■□ 3.17
DDX54-207ENST00000550016 ERCC6Q03468 1493 aa34.78■■■■□ 3.16
DDX54-207ENST00000550016 PDS5BQ9NTI5 1447 aa34.7■■■■□ 3.15
DDX54-207ENST00000550016 CFTRP13569 1480 aa34.7■■■■□ 3.15
DDX54-207ENST00000550016 KIF21AQ7Z4S6 1674 aa34.65■■■■□ 3.14
DDX54-207ENST00000550016 PRDM2Q13029 1718 aa34.58■■■■□ 3.13
DDX54-207ENST00000550016 FANCD2Q9BXW9 1451 aa34.46■■■■□ 3.11
DDX54-207ENST00000550016 THOC2Q8NI27 1593 aaKnown RBP34.44■■■■□ 3.1
DDX54-207ENST00000550016 CEP164Q9UPV0 1460 aa34.41■■■■□ 3.1
DDX54-207ENST00000550016 CUX2O14529 1486 aa34.36■■■■□ 3.09
DDX54-207ENST00000550016 MRC2Q9UBG0 1479 aa34.33■■■■□ 3.09
DDX54-207ENST00000550016 WDR62O43379 1518 aa34.2■■■■□ 3.07
DDX54-207ENST00000550016 URB2Q14146 1524 aaKnown RBP34.11■■■■□ 3.05
DDX54-207ENST00000550016 ABCC8Q09428 1581 aa33.98■■■■□ 3.03
DDX54-207ENST00000550016 TOPBP1Q92547 1522 aa33.94■■■■□ 3.02
DDX54-207ENST00000550016 DNMBPQ6XZF7 1577 aa33.94■■■■□ 3.02
DDX54-207ENST00000550016 CUX1P39880 1505 aa33.75■■■□□ 2.99
DDX54-207ENST00000550016 IFT140Q96RY7 1462 aa33.69■■■□□ 2.98
DDX54-207ENST00000550016 POLA1P09884 1462 aaPredicted RBP33.65■■■□□ 2.98
DDX54-207ENST00000550016 FGD5Q6ZNL6 1462 aa33.6■■■□□ 2.97
DDX54-207ENST00000550016 TARBP1Q13395 1621 aaKnown RBP33.59■■■□□ 2.97
DDX54-207ENST00000550016 WRNQ14191 1432 aaPredicted RBP eCLIP33.59■■■□□ 2.97
DDX54-207ENST00000550016 BIVM-ERCC5R4GMW8 1640 aa33.55■■■□□ 2.96
DDX54-207ENST00000550016 SOGA1O94964 1423 aa33.54■■■□□ 2.96
DDX54-207ENST00000550016 TOP2BQ02880 1626 aa33.53■■■□□ 2.96
DDX54-207ENST00000550016 SYNJ1O43426 1573 aa33.51■■■□□ 2.96
DDX54-207ENST00000550016 RAD54L2Q9Y4B4 1467 aa33.5■■■□□ 2.95
DDX54-207ENST00000550016 ZNF608Q9ULD9 1512 aaPredicted RBP33.5■■■□□ 2.95
DDX54-207ENST00000550016 EIF4G3O43432 1585 aaKnown RBP33.4■■■□□ 2.94
DDX54-207ENST00000550016 WDR97A6NE52 1622 aa33.36■■■□□ 2.93
DDX54-207ENST00000550016 AQRO60306 1485 aaKnown RBP eCLIP33.35■■■□□ 2.936e-9■■■■■ 37.6
DDX54-207ENST00000550016 TDRD9Q8NDG6 1382 aaKnown RBP33.32■■■□□ 2.92
DDX54-207ENST00000550016 ABCA10Q8WWZ4 1543 aa33.3■■■□□ 2.92
DDX54-207ENST00000550016 ABCA5Q8WWZ7 1642 aa33.17■■■□□ 2.9
DDX54-207ENST00000550016 GAPVD1Q14C86 1478 aa33.15■■■□□ 2.9
DDX54-207ENST00000550016 PBRM1Q86U86 1689 aa33.13■■■□□ 2.89
DDX54-207ENST00000550016 GRIN2BQ13224 1484 aa33.12■■■□□ 2.89
DDX54-207ENST00000550016 DNAJC5Q9H3Z4 198 aa33.12■■■□□ 2.89
DDX54-207ENST00000550016 SNAPC4Q5SXM2 1469 aa33.04■■■□□ 2.88
DDX54-207ENST00000550016 MAGI1Q96QZ7 1491 aaPredicted RBP33.02■■■□□ 2.88
DDX54-207ENST00000550016 CHD1O14646 1710 aa33.02■■■□□ 2.88
DDX54-207ENST00000550016 OSCARQ8IYS5 282 aa32.99■■■□□ 2.87
DDX54-207ENST00000550016 TRIM41Q8WV44 630 aa32.94■■■□□ 2.86
DDX54-207ENST00000550016 FBLN2P98095 1184 aa32.93■■■□□ 2.86
DDX54-207ENST00000550016 ERICH3Q5RHP9 1530 aa32.92■■■□□ 2.86
DDX54-207ENST00000550016 KIF27Q86VH2 1401 aa32.89■■■□□ 2.86
DDX54-207ENST00000550016 SYNJ2O15056 1496 aa32.88■■■□□ 2.85
DDX54-207ENST00000550016 CHMP7Q8WUX9 453 aaPredicted RBP32.87■■■□□ 2.85
DDX54-207ENST00000550016 ADAMTS12P58397 1594 aa32.82■■■□□ 2.84
DDX54-207ENST00000550016 FHAD1B1AJZ9 1412 aa32.77■■■□□ 2.84
DDX54-207ENST00000550016 IGF1RP08069 1367 aa32.73■■■□□ 2.83
DDX54-207ENST00000550016 GRIN2AQ12879 1464 aa32.68■■■□□ 2.82
DDX54-207ENST00000550016 CUL7Q14999 1698 aa32.68■■■□□ 2.82
DDX54-207ENST00000550016 CHIC1Q5VXU3 224 aa32.65■■■□□ 2.82
DDX54-207ENST00000550016 RUSC2Q8N2Y8 1516 aa32.64■■■□□ 2.82
DDX54-207ENST00000550016 CLASP1Q7Z460 1538 aa32.59■■■□□ 2.81
DDX54-207ENST00000550016 CARMIL1Q5VZK9 1371 aa32.55■■■□□ 2.8
DDX54-207ENST00000550016 CEP170Q5SW79 1584 aa32.53■■■□□ 2.8
DDX54-207ENST00000550016 NUP160Q12769 1436 aa32.53■■■□□ 2.8
DDX54-207ENST00000550016 RIMBP3CA6NJZ7 1639 aa32.45■■■□□ 2.79
DDX54-207ENST00000550016 RIMBP3BA6NNM3 1639 aa32.45■■■□□ 2.79
DDX54-207ENST00000550016 RIMBP3Q9UFD9 1639 aa32.45■■■□□ 2.79
DDX54-207ENST00000550016 ARHGEF11O15085 1522 aa32.43■■■□□ 2.78
DDX54-207ENST00000550016 EEA1Q15075 1411 aa32.38■■■□□ 2.77
DDX54-207ENST00000550016 RAPGEF2Q9Y4G8 1499 aa32.37■■■□□ 2.77
DDX54-207ENST00000550016 CSRNP3Q8WYN3 585 aa32.33■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms