RNA–Protein interactions for RNA: ENST00000505982.1

CHD1-204, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 3

Gene CHD1, Length 758 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-204ENST00000505982 AEBP2Q6ZN18 517 aaPredicted RBP33.93■■■■□ 3.02
CHD1-204ENST00000505982 CHIC1Q5VXU3 224 aa32.24■■■□□ 2.75
CHD1-204ENST00000505982 SENP3Q9H4L4 574 aaPredicted RBP29.05■■■□□ 2.24
CHD1-204ENST00000505982 PHF23Q9BUL5 403 aaPredicted RBP28.64■■■□□ 2.18
CHD1-204ENST00000505982 FOXD1Q16676 465 aa27.03■■□□□ 1.92
CHD1-204ENST00000505982 PLPPR3Q6T4P5 718 aa25.78■■□□□ 1.72
CHD1-204ENST00000505982 MSH5O43196 834 aa25.39■■□□□ 1.66
CHD1-204ENST00000505982 PIAS4Q8N2W9 510 aaPredicted RBP25.28■■□□□ 1.64
CHD1-204ENST00000505982 PPP6R1Q9UPN7 881 aa25.21■■□□□ 1.63
CHD1-204ENST00000505982 ADRA2BP18089 450 aa25.14■■□□□ 1.62
CHD1-204ENST00000505982 POTEDQ86YR6 584 aa24.8■■□□□ 1.56
CHD1-204ENST00000505982 SCAF1Q9H7N4 1312 aaKnown RBP23.12■■□□□ 1.29
CHD1-204ENST00000505982 MAPK8IP2Q13387 824 aaPredicted RBP23.1■■□□□ 1.29
CHD1-204ENST00000505982 DMRT2Q9Y5R5 561 aa23■■□□□ 1.27
CHD1-204ENST00000505982 PPP4R3CPQ6ZMV5 832 aa22.57■■□□□ 1.2
CHD1-204ENST00000505982 CNKSR2Q8WXI2 1034 aa22.18■■□□□ 1.14
CHD1-204ENST00000505982 HOXD11P31277 338 aaPredicted RBP22.14■■□□□ 1.13
CHD1-204ENST00000505982 DCAF8L1A6NGE4 600 aa22.1■■□□□ 1.13
CHD1-204ENST00000505982 RNF216Q9NWF9 866 aaPredicted RBP21.98■■□□□ 1.11
CHD1-204ENST00000505982 CACNB1Q02641 598 aaPredicted RBP21.81■■□□□ 1.08
CHD1-204ENST00000505982 NCBP3Q53F19 620 aaKnown RBP21.75■■□□□ 1.07
CHD1-204ENST00000505982 RNF39Q9H2S5 420 aa21.61■■□□□ 1.05
CHD1-204ENST00000505982 DNAJC5BQ9UF47 199 aa21.42■■□□□ 1.02
CHD1-204ENST00000505982 NPM3O75607 178 aaKnown RBP21.35■■□□□ 1.01
CHD1-204ENST00000505982 C1QBPQ07021 282 aaKnown RBP21.34■■□□□ 1.01
CHD1-204ENST00000505982 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.14■□□□□ 0.97
CHD1-204ENST00000505982 KCNA4P22459 653 aa20.88■□□□□ 0.93
CHD1-204ENST00000505982 U3KPZ7 1027 aaPredicted RBP20.62■□□□□ 0.89
CHD1-204ENST00000505982 SLC4A2P04920 1241 aa20.38■□□□□ 0.85
CHD1-204ENST00000505982 CAPN15O75808 1086 aa20.36■□□□□ 0.85
CHD1-204ENST00000505982 SPINK5Q9NQ38 1064 aaPredicted RBP20.33■□□□□ 0.85
CHD1-204ENST00000505982 DSG3P32926 999 aa20.22■□□□□ 0.83
CHD1-204ENST00000505982 APLP2Q06481 763 aa20.17■□□□□ 0.82
CHD1-204ENST00000505982 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.12■□□□□ 0.81
CHD1-204ENST00000505982 HNRNPUL2Q1KMD3 747 aaKnown RBP20.12■□□□□ 0.81
CHD1-204ENST00000505982 TRHP20396 242 aaPredicted RBP20.02■□□□□ 0.8
CHD1-204ENST00000505982 ZNF219Q9P2Y4 722 aaPredicted RBP20■□□□□ 0.79
CHD1-204ENST00000505982 SAMD1Q6SPF0 538 aaPredicted RBP19.98■□□□□ 0.79
CHD1-204ENST00000505982 ABCB7O75027 752 aa19.85■□□□□ 0.77
CHD1-204ENST00000505982 MYCNP04198 464 aaPredicted RBP19.79■□□□□ 0.76
CHD1-204ENST00000505982 SLC4A1APQ9BWU0 796 aaKnown RBP19.74■□□□□ 0.75
CHD1-204ENST00000505982 FOXD4L1Q9NU39 408 aa19.54■□□□□ 0.72
CHD1-204ENST00000505982 POLA2Q14181 598 aa19.47■□□□□ 0.71
CHD1-204ENST00000505982 POTEHQ6S545 545 aa19.45■□□□□ 0.7
CHD1-204ENST00000505982 RBM42Q9BTD8 480 aaKnown RBP19.36■□□□□ 0.69
CHD1-204ENST00000505982 ATF5Q9Y2D1 282 aaPredicted RBP19.26■□□□□ 0.67
CHD1-204ENST00000505982 ZBTB22O15209 634 aa19.15■□□□□ 0.66
CHD1-204ENST00000505982 ZBTB12Q9Y330 459 aaPredicted RBP19.12■□□□□ 0.65
CHD1-204ENST00000505982 ATXN8OSP0DMR3 200 aa18.98■□□□□ 0.63
CHD1-204ENST00000505982 CHRDL2Q6WN34 429 aa18.91■□□□□ 0.62
CHD1-204ENST00000505982 AKT1S1Q96B36 256 aa18.88■□□□□ 0.61
CHD1-204ENST00000505982 OSCARQ8IYS5 282 aa18.81■□□□□ 0.6
CHD1-204ENST00000505982 REM2Q8IYK8 340 aaPredicted RBP18.67■□□□□ 0.58
CHD1-204ENST00000505982 FBLN2P98095 1184 aa18.62■□□□□ 0.57
CHD1-204ENST00000505982 SPDYE2BA6NHP3 402 aa18.49■□□□□ 0.55
CHD1-204ENST00000505982 SPDYE6P0CI01 402 aa18.49■□□□□ 0.55
CHD1-204ENST00000505982 SPDYE2Q495Y8 402 aa18.49■□□□□ 0.55
CHD1-204ENST00000505982 PITPNM1O00562 1244 aa18.46■□□□□ 0.55
CHD1-204ENST00000505982 PIP4P2Q8N4L2 257 aa18.43■□□□□ 0.54
CHD1-204ENST00000505982 MKRN4PQ13434 485 aaPredicted RBP18.37■□□□□ 0.53
CHD1-204ENST00000505982 FXR2P51116 673 aaKnown RBP eCLIP18.32■□□□□ 0.52
CHD1-204ENST00000505982 ZNF692Q9BU19 519 aaPredicted RBP18.27■□□□□ 0.52
CHD1-204ENST00000505982 CSRNP3Q8WYN3 585 aa18.26■□□□□ 0.51
CHD1-204ENST00000505982 SP7Q8TDD2 431 aaPredicted RBP18.22■□□□□ 0.51
CHD1-204ENST00000505982 SPDYE1Q8NFV5 336 aaPredicted RBP18.2■□□□□ 0.5
CHD1-204ENST00000505982 SSUH2Q9Y2M2 353 aa18.2■□□□□ 0.5
CHD1-204ENST00000505982 HAX1O00165 279 aa18.16■□□□□ 0.5
CHD1-204ENST00000505982 CLEC11AQ9Y240 323 aa18.16■□□□□ 0.5
CHD1-204ENST00000505982 PRKAR2AP13861 404 aaKnown RBP18.01■□□□□ 0.47
CHD1-204ENST00000505982 EHMT2Q96KQ7 1210 aa18.01■□□□□ 0.47
CHD1-204ENST00000505982 PABPN1Q86U42 306 aaKnown RBP eCLIP17.98■□□□□ 0.47
CHD1-204ENST00000505982 PRR29P0C7W0 189 aa17.87■□□□□ 0.45
CHD1-204ENST00000505982 EVX2Q03828 476 aa17.85■□□□□ 0.45
CHD1-204ENST00000505982 CHADLQ6NUI6 762 aa17.77■□□□□ 0.44
CHD1-204ENST00000505982 C19orf67A6NJJ6 358 aa17.74■□□□□ 0.43
CHD1-204ENST00000505982 SPDYE4A6NLX3 237 aa17.55■□□□□ 0.4
CHD1-204ENST00000505982 STAG3Q9UJ98 1225 aa17.54■□□□□ 0.4
CHD1-204ENST00000505982 FARP1Q9Y4F1 1045 aaPredicted RBP17.53■□□□□ 0.4
CHD1-204ENST00000505982 GABBR2O75899 941 aa17.49■□□□□ 0.39
CHD1-204ENST00000505982 CD44P16070 742 aaKnown RBP17.44■□□□□ 0.38
CHD1-204ENST00000505982 CREBZFQ9NS37 354 aa17.35■□□□□ 0.37
CHD1-204ENST00000505982 CLCN6P51797 869 aa17.3■□□□□ 0.36
CHD1-204ENST00000505982 ZRANB1Q9UGI0 708 aa17.2■□□□□ 0.34
CHD1-204ENST00000505982 ZNF579Q8NAF0 562 aaKnown RBP17.16■□□□□ 0.34
CHD1-204ENST00000505982 NPM1P06748 294 aaKnown RBP eCLIP17.12■□□□□ 0.33
CHD1-204ENST00000505982 PAK3O75914 559 aaPredicted RBP17.1■□□□□ 0.33
CHD1-204ENST00000505982 LHX8Q68G74 356 aa17.1■□□□□ 0.33
CHD1-204ENST00000505982 POTEIP0CG38 1075 aa17.07■□□□□ 0.32
CHD1-204ENST00000505982 PROM2Q8N271 834 aa17.07■□□□□ 0.32
CHD1-204ENST00000505982 DCBLD2Q96PD2 775 aa17.07■□□□□ 0.32
CHD1-204ENST00000505982 MNX1P50219 401 aaPredicted RBP17.02■□□□□ 0.32
CHD1-204ENST00000505982 GALR2O43603 387 aaPredicted RBP16.93■□□□□ 0.3
CHD1-204ENST00000505982 PHF12Q96QT6 1004 aa16.9■□□□□ 0.3
CHD1-204ENST00000505982 PLEKHG5O94827 1062 aa16.83■□□□□ 0.28
CHD1-204ENST00000505982 MIER1Q8N108 512 aa16.78■□□□□ 0.28
CHD1-204ENST00000505982 TSPYL2Q9H2G4 693 aaPredicted RBP16.76■□□□□ 0.27
CHD1-204ENST00000505982 MS4A3Q96HJ5 214 aa16.69■□□□□ 0.26
CHD1-204ENST00000505982 PLCD3Q8N3E9 789 aa16.65■□□□□ 0.26
CHD1-204ENST00000505982 CCDC61Q9Y6R9 512 aa16.65■□□□□ 0.26
CHD1-204ENST00000505982 FKBP8Q14318 412 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms