RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 PELP1Q8IZL8 1130 aaKnown RBP11.93□□□□□ -0.5
SMC1A-201ENST00000322213 MYT1Q01538 1121 aa11.88□□□□□ -0.51
SMC1A-201ENST00000322213 NISCHQ9Y2I1 1504 aa11.56□□□□□ -0.56
SMC1A-201ENST00000322213 TTBK1Q5TCY1 1321 aaPredicted RBP11.13□□□□□ -0.63
SMC1A-201ENST00000322213 CENPBP07199 599 aaPredicted RBP11.06□□□□□ -0.64
SMC1A-201ENST00000322213 ZEB1P37275 1124 aaPredicted RBP11.05□□□□□ -0.64
SMC1A-201ENST00000322213 SUPT5HO00267 1087 aaKnown RBP11.03□□□□□ -0.64
SMC1A-201ENST00000322213 PCGF6Q9BYE7 350 aa11□□□□□ -0.65
SMC1A-201ENST00000322213 SHROOM4Q9ULL8 1493 aa10.87□□□□□ -0.67
SMC1A-201ENST00000322213 DCAF8L2P0C7V8 631 aa10.86□□□□□ -0.67
SMC1A-201ENST00000322213 HRCP23327 699 aa10.84□□□□□ -0.67
SMC1A-201ENST00000322213 CCER1Q8TC90 406 aaPredicted RBP10.82□□□□□ -0.68
SMC1A-201ENST00000322213 ERICH6Q7L0X2 663 aa10.81□□□□□ -0.68
SMC1A-201ENST00000322213 TRIM26Q12899 539 aaPredicted RBP10.6□□□□□ -0.71
SMC1A-201ENST00000322213 NEFLP07196 543 aa10.57□□□□□ -0.72
SMC1A-201ENST00000322213 APLP2Q06481 763 aa10.52□□□□□ -0.73
SMC1A-201ENST00000322213 YTHDC1Q96MU7 727 aaKnown RBP10.51□□□□□ -0.73
SMC1A-201ENST00000322213 EHMT2Q96KQ7 1210 aa10.47□□□□□ -0.73
SMC1A-201ENST00000322213 CCDC180Q9P1Z9 1646 aa10.46□□□□□ -0.73
SMC1A-201ENST00000322213 PPARGC1BQ86YN6 1023 aaKnown RBP10.39□□□□□ -0.75
SMC1A-201ENST00000322213 DIEXFQ68CQ4 756 aaKnown RBP10.34□□□□□ -0.75
SMC1A-201ENST00000322213 GTF3C3Q9Y5Q9 886 aa10.31□□□□□ -0.76
SMC1A-201ENST00000322213 TRIM41Q8WV44 630 aa10.31□□□□□ -0.76
SMC1A-201ENST00000322213 FAM9AQ8IZU1 332 aaPredicted RBP10.29□□□□□ -0.76
SMC1A-201ENST00000322213 DCAF1Q9Y4B6 1507 aa10.27□□□□□ -0.76
SMC1A-201ENST00000322213 CLSPNQ9HAW4 1339 aa10.27□□□□□ -0.77
SMC1A-201ENST00000322213 SCAF1Q9H7N4 1312 aaKnown RBP10.26□□□□□ -0.77
SMC1A-201ENST00000322213 RTL5Q5HYW3 569 aaPredicted RBP10.25□□□□□ -0.77
SMC1A-201ENST00000322213 ACIN1Q9UKV3 1341 aaKnown RBP10.24□□□□□ -0.77
SMC1A-201ENST00000322213 DAXXQ9UER7 740 aaPredicted RBP10.22□□□□□ -0.77
SMC1A-201ENST00000322213 BCL11AQ9H165 835 aa10.18□□□□□ -0.78
SMC1A-201ENST00000322213 MYT1LQ9UL68 1186 aa10.14□□□□□ -0.79
SMC1A-201ENST00000322213 CHIC1Q5VXU3 224 aa10.13□□□□□ -0.79
SMC1A-201ENST00000322213 UBTFP17480 764 aaKnown RBP10.07□□□□□ -0.8
SMC1A-201ENST00000322213 LOC105371045A0A1W2PR82 267 aa10.06□□□□□ -0.8
SMC1A-201ENST00000322213 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.05□□□□□ -0.8
SMC1A-201ENST00000322213 ZNF316A6NFI3 1004 aaPredicted RBP10.04□□□□□ -0.8
SMC1A-201ENST00000322213 GLIPR1L2Q4G1C9 344 aa10.02□□□□□ -0.81
SMC1A-201ENST00000322213 CDK11AQ9UQ88 783 aaPredicted RBP10.02□□□□□ -0.81
SMC1A-201ENST00000322213 ANP32EQ9BTT0 268 aa9.99□□□□□ -0.81
SMC1A-201ENST00000322213 NEUROD1Q13562 356 aa9.95□□□□□ -0.82
SMC1A-201ENST00000322213 ANP32AP39687 249 aaKnown RBP9.91□□□□□ -0.82
SMC1A-201ENST00000322213 BCANQ96GW7 911 aa9.89□□□□□ -0.83
SMC1A-201ENST00000322213 RANGAP1P46060 587 aaPredicted RBP9.89□□□□□ -0.83
SMC1A-201ENST00000322213 MYO15BQ96JP2 1530 aa9.87□□□□□ -0.83
SMC1A-201ENST00000322213 PRKCSHP14314 528 aaPredicted RBP9.86□□□□□ -0.83
SMC1A-201ENST00000322213 HNRNPUL2Q1KMD3 747 aaKnown RBP9.85□□□□□ -0.83
SMC1A-201ENST00000322213 EIF5BO60841 1220 aaKnown RBP9.83□□□□□ -0.84
SMC1A-201ENST00000322213 ANP32CO43423 234 aa9.83□□□□□ -0.84
SMC1A-201ENST00000322213 ATP1B4Q9UN42 357 aaPredicted RBP9.76□□□□□ -0.85
SMC1A-201ENST00000322213 FKBP8Q14318 412 aa9.73□□□□□ -0.85
SMC1A-201ENST00000322213 SLC24A1O60721 1099 aa9.73□□□□□ -0.85
SMC1A-201ENST00000322213 ZCCHC6Q5VYS8 1495 aaKnown RBP9.71□□□□□ -0.85
SMC1A-201ENST00000322213 NBR1Q14596 966 aa9.71□□□□□ -0.85
SMC1A-201ENST00000322213 ITGAEP38570 1179 aa9.7□□□□□ -0.86
SMC1A-201ENST00000322213 SCRIBQ14160 1630 aa9.68□□□□□ -0.86
SMC1A-201ENST00000322213 ERICH6BQ5W0A0 696 aa9.68□□□□□ -0.86
SMC1A-201ENST00000322213 ANP32BQ92688 251 aaKnown RBP9.66□□□□□ -0.86
SMC1A-201ENST00000322213 CSRNP3Q8WYN3 585 aa9.64□□□□□ -0.87
SMC1A-201ENST00000322213 ZBTB47Q9UFB7 747 aaPredicted RBP9.64□□□□□ -0.87
SMC1A-201ENST00000322213 POLR3GLQ9BT43 218 aa9.63□□□□□ -0.87
SMC1A-201ENST00000322213 MIER1Q8N108 512 aa9.6□□□□□ -0.87
SMC1A-201ENST00000322213 NPM2Q86SE8 214 aaKnown RBP9.59□□□□□ -0.87
SMC1A-201ENST00000322213 SUPT16HQ9Y5B9 1047 aaKnown RBP9.56□□□□□ -0.88
SMC1A-201ENST00000322213 FAM50AQ14320 339 aaKnown RBP9.53□□□□□ -0.88
SMC1A-201ENST00000322213 DDRGK1Q96HY6 314 aa9.53□□□□□ -0.88
SMC1A-201ENST00000322213 UPF2Q9HAU5 1272 aaKnown RBP9.52□□□□□ -0.88
SMC1A-201ENST00000322213 RB1CC1Q8TDY2 1594 aa9.52□□□□□ -0.89
SMC1A-201ENST00000322213 HNRNPUQ00839 825 aaKnown RBP eCLIP9.52□□□□□ -0.89
SMC1A-201ENST00000322213 DEKP35659 375 aaKnown RBP9.52□□□□□ -0.89
SMC1A-201ENST00000322213 ABCC9O60706 1549 aa9.52□□□□□ -0.89
SMC1A-201ENST00000322213 CCDC136Q96JN2 1154 aa9.51□□□□□ -0.89
SMC1A-201ENST00000322213 NOP58Q9Y2X3 529 aaKnown RBP9.51□□□□□ -0.89
SMC1A-201ENST00000322213 CNGB1Q14028 1251 aaPredicted RBP9.5□□□□□ -0.89
SMC1A-201ENST00000322213 TNNT2P45379 298 aaPredicted RBP9.5□□□□□ -0.89
SMC1A-201ENST00000322213 TONSLQ96HA7 1378 aa9.48□□□□□ -0.89
SMC1A-201ENST00000322213 NEFMP07197 916 aa9.47□□□□□ -0.89
SMC1A-201ENST00000322213 CANXP27824 592 aaKnown RBP9.47□□□□□ -0.89
SMC1A-201ENST00000322213 TRIM52Q96A61 297 aa9.46□□□□□ -0.89
SMC1A-201ENST00000322213 HSP90AA1P07900 732 aaKnown RBP9.45□□□□□ -0.9
SMC1A-201ENST00000322213 PPM1GO15355 546 aaPredicted RBP9.43□□□□□ -0.9
SMC1A-201ENST00000322213 CEP162Q5TB80 1403 aa9.43□□□□□ -0.9
SMC1A-201ENST00000322213 TRIM44Q96DX7 344 aaPredicted RBP9.42□□□□□ -0.9
SMC1A-201ENST00000322213 BECN1Q14457 450 aa9.42□□□□□ -0.9
SMC1A-201ENST00000322213 KAT6BQ8WYB5 2073 aa9.42□□□□□ -0.9
SMC1A-201ENST00000322213 DDX10Q13206 875 aaKnown RBP9.42□□□□□ -0.9
SMC1A-201ENST00000322213 RBM19Q9Y4C8 960 aaKnown RBP9.42□□□□□ -0.9
SMC1A-201ENST00000322213 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.41□□□□□ -0.9
SMC1A-201ENST00000322213 GOLGA3Q08378 1498 aa9.41□□□□□ -0.9
SMC1A-201ENST00000322213 PKNOX2Q96KN3 472 aa9.41□□□□□ -0.9
SMC1A-201ENST00000322213 RTN4Q9NQC3 1192 aaKnown RBP9.41□□□□□ -0.9
SMC1A-201ENST00000322213 TSHZ2Q9NRE2 1034 aa9.4□□□□□ -0.91
SMC1A-201ENST00000322213 EEA1Q15075 1411 aa9.4□□□□□ -0.91
SMC1A-201ENST00000322213 NAP1L5Q96NT1 182 aaPredicted RBP9.39□□□□□ -0.91
SMC1A-201ENST00000322213 NCLP19338 710 aaKnown RBP9.38□□□□□ -0.91
SMC1A-201ENST00000322213 CLIP1P30622 1438 aa9.36□□□□□ -0.91
SMC1A-201ENST00000322213 RSPH6AQ9H0K4 717 aa9.36□□□□□ -0.91
SMC1A-201ENST00000322213 ARXQ96QS3 562 aa9.36□□□□□ -0.91
SMC1A-201ENST00000322213 PPP4R2Q9NY27 417 aa9.36□□□□□ -0.91
SMC1A-201ENST00000322213 FAM9BQ8IZU0 186 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms