RNA–Protein interactions for RNA: ENST00000560909.2

ZEB1-220, Transcript of zinc finger E-box binding homeobox 1, humanhuman

TSL 4

Gene ZEB1, Length 564 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZEB1-220ENST00000560909 AEBP2Q6ZN18 517 aaPredicted RBP24.12■■□□□ 1.45
ZEB1-220ENST00000560909 CHIC1Q5VXU3 224 aa22.51■■□□□ 1.19
ZEB1-220ENST00000560909 SENP3Q9H4L4 574 aaPredicted RBP20.76■□□□□ 0.91
ZEB1-220ENST00000560909 POTEDQ86YR6 584 aa20.54■□□□□ 0.88
ZEB1-220ENST00000560909 PHF23Q9BUL5 403 aaPredicted RBP20.33■□□□□ 0.85
ZEB1-220ENST00000560909 FOXD1Q16676 465 aa19.53■□□□□ 0.72
ZEB1-220ENST00000560909 MSH5O43196 834 aa18.76■□□□□ 0.59
ZEB1-220ENST00000560909 PIAS4Q8N2W9 510 aaPredicted RBP17.95■□□□□ 0.46
ZEB1-220ENST00000560909 PPP6R1Q9UPN7 881 aa17.27■□□□□ 0.36
ZEB1-220ENST00000560909 ADRA2BP18089 450 aa17.15■□□□□ 0.34
ZEB1-220ENST00000560909 CACNB1Q02641 598 aaPredicted RBP16.93■□□□□ 0.3
ZEB1-220ENST00000560909 PLPPR3Q6T4P5 718 aa16.7■□□□□ 0.26
ZEB1-220ENST00000560909 DMRT2Q9Y5R5 561 aa16.26■□□□□ 0.19
ZEB1-220ENST00000560909 MAPK8IP2Q13387 824 aaPredicted RBP16.15■□□□□ 0.18
ZEB1-220ENST00000560909 RNF39Q9H2S5 420 aa15.88■□□□□ 0.13
ZEB1-220ENST00000560909 POTEHQ6S545 545 aa15.84■□□□□ 0.13
ZEB1-220ENST00000560909 DCAF8L1A6NGE4 600 aa15.74■□□□□ 0.11
ZEB1-220ENST00000560909 SCAF1Q9H7N4 1312 aaKnown RBP15.66■□□□□ 0.1
ZEB1-220ENST00000560909 C1QBPQ07021 282 aaKnown RBP15.57■□□□□ 0.08
ZEB1-220ENST00000560909 HOXD11P31277 338 aaPredicted RBP15.14■□□□□ 0.01
ZEB1-220ENST00000560909 DNAJC5BQ9UF47 199 aa14.82□□□□□ -0.04
ZEB1-220ENST00000560909 RNF216Q9NWF9 866 aaPredicted RBP14.68□□□□□ -0.06
ZEB1-220ENST00000560909 CNKSR2Q8WXI2 1034 aa14.49□□□□□ -0.09
ZEB1-220ENST00000560909 PPP4R3CPQ6ZMV5 832 aa14.48□□□□□ -0.09
ZEB1-220ENST00000560909 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.47□□□□□ -0.09
ZEB1-220ENST00000560909 DSG3P32926 999 aa14.45□□□□□ -0.1
ZEB1-220ENST00000560909 CAPN15O75808 1086 aa14.26□□□□□ -0.13
ZEB1-220ENST00000560909 SP7Q8TDD2 431 aaPredicted RBP14.23□□□□□ -0.13
ZEB1-220ENST00000560909 SPINK5Q9NQ38 1064 aaPredicted RBP14.22□□□□□ -0.13
ZEB1-220ENST00000560909 CHRDL2Q6WN34 429 aa14.05□□□□□ -0.16
ZEB1-220ENST00000560909 U3KPZ7 1027 aaPredicted RBP14.01□□□□□ -0.17
ZEB1-220ENST00000560909 ABCB7O75027 752 aa13.83□□□□□ -0.2
ZEB1-220ENST00000560909 RBM42Q9BTD8 480 aaKnown RBP13.81□□□□□ -0.2
ZEB1-220ENST00000560909 TRHP20396 242 aaPredicted RBP13.73□□□□□ -0.21
ZEB1-220ENST00000560909 PLSCR2Q9NRY7 297 aa13.65□□□□□ -0.22
ZEB1-220ENST00000560909 ZNF219Q9P2Y4 722 aaPredicted RBP13.61□□□□□ -0.23
ZEB1-220ENST00000560909 HAX1O00165 279 aa13.56□□□□□ -0.24
ZEB1-220ENST00000560909 NCBP3Q53F19 620 aaKnown RBP13.51□□□□□ -0.25
ZEB1-220ENST00000560909 APLP2Q06481 763 aa13.45□□□□□ -0.26
ZEB1-220ENST00000560909 PIP4P2Q8N4L2 257 aa13.42□□□□□ -0.26
ZEB1-220ENST00000560909 NPM3O75607 178 aaKnown RBP13.34□□□□□ -0.27
ZEB1-220ENST00000560909 LHX8Q68G74 356 aa13.34□□□□□ -0.27
ZEB1-220ENST00000560909 EVX2Q03828 476 aa13.29□□□□□ -0.28
ZEB1-220ENST00000560909 AKT1S1Q96B36 256 aa13.21□□□□□ -0.29
ZEB1-220ENST00000560909 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.13□□□□□ -0.31
ZEB1-220ENST00000560909 HNRNPUL2Q1KMD3 747 aaKnown RBP13.13□□□□□ -0.31
ZEB1-220ENST00000560909 FXR2P51116 673 aaKnown RBP eCLIP13.11□□□□□ -0.31
ZEB1-220ENST00000560909 REM2Q8IYK8 340 aaPredicted RBP13.11□□□□□ -0.31
ZEB1-220ENST00000560909 SLC4A2P04920 1241 aa13.07□□□□□ -0.32
ZEB1-220ENST00000560909 POLA2Q14181 598 aa13.04□□□□□ -0.32
ZEB1-220ENST00000560909 SAMD1Q6SPF0 538 aaPredicted RBP13.01□□□□□ -0.33
ZEB1-220ENST00000560909 PITPNM1O00562 1244 aa13□□□□□ -0.33
ZEB1-220ENST00000560909 NISCHQ9Y2I1 1504 aa12.93□□□□□ -0.34
ZEB1-220ENST00000560909 GABBR2O75899 941 aa12.9□□□□□ -0.34
ZEB1-220ENST00000560909 C19orf67A6NJJ6 358 aa12.75□□□□□ -0.37
ZEB1-220ENST00000560909 OSCARQ8IYS5 282 aa12.69□□□□□ -0.38
ZEB1-220ENST00000560909 PRKAR2AP13861 404 aaKnown RBP12.66□□□□□ -0.38
ZEB1-220ENST00000560909 POTEMA6NI47 508 aa12.65□□□□□ -0.38
ZEB1-220ENST00000560909 ZBTB12Q9Y330 459 aaPredicted RBP12.63□□□□□ -0.39
ZEB1-220ENST00000560909 POTEIP0CG38 1075 aa12.62□□□□□ -0.39
ZEB1-220ENST00000560909 POTEGQ6S5H5 508 aa12.56□□□□□ -0.4
ZEB1-220ENST00000560909 PCDH10Q9P2E7 1040 aa12.44□□□□□ -0.42
ZEB1-220ENST00000560909 OTUD5Q96G74 571 aa12.4□□□□□ -0.42
ZEB1-220ENST00000560909 CLEC11AQ9Y240 323 aa12.36□□□□□ -0.43
ZEB1-220ENST00000560909 MYCNP04198 464 aaPredicted RBP12.35□□□□□ -0.43
ZEB1-220ENST00000560909 DCBLD2Q96PD2 775 aa12.3□□□□□ -0.44
ZEB1-220ENST00000560909 SPDYE1Q8NFV5 336 aaPredicted RBP12.27□□□□□ -0.45
ZEB1-220ENST00000560909 CHADLQ6NUI6 762 aa12.26□□□□□ -0.45
ZEB1-220ENST00000560909 ATF5Q9Y2D1 282 aaPredicted RBP12.2□□□□□ -0.46
ZEB1-220ENST00000560909 CLCN6P51797 869 aa12.19□□□□□ -0.46
ZEB1-220ENST00000560909 POTEB2H3BUK9 544 aa12.18□□□□□ -0.46
ZEB1-220ENST00000560909 CD44P16070 742 aaKnown RBP12.18□□□□□ -0.46
ZEB1-220ENST00000560909 SPDYE2BA6NHP3 402 aa12.14□□□□□ -0.47
ZEB1-220ENST00000560909 SPDYE6P0CI01 402 aa12.14□□□□□ -0.47
ZEB1-220ENST00000560909 SPDYE2Q495Y8 402 aa12.14□□□□□ -0.47
ZEB1-220ENST00000560909 LCE2DQ5TA82 110 aaPredicted RBP12.01□□□□□ -0.49
ZEB1-220ENST00000560909 KCNA4P22459 653 aa11.95□□□□□ -0.5
ZEB1-220ENST00000560909 PRR29P0C7W0 189 aa11.94□□□□□ -0.5
ZEB1-220ENST00000560909 FAM163AQ96GL9 167 aaPredicted RBP11.94□□□□□ -0.5
ZEB1-220ENST00000560909 FARP1Q9Y4F1 1045 aaPredicted RBP11.91□□□□□ -0.5
ZEB1-220ENST00000560909 ZNF579Q8NAF0 562 aaKnown RBP11.9□□□□□ -0.5
ZEB1-220ENST00000560909 GALR2O43603 387 aaPredicted RBP11.88□□□□□ -0.51
ZEB1-220ENST00000560909 SSUH2Q9Y2M2 353 aa11.83□□□□□ -0.52
ZEB1-220ENST00000560909 CDAN1Q8IWY9 1227 aa11.82□□□□□ -0.52
ZEB1-220ENST00000560909 ZNF692Q9BU19 519 aaPredicted RBP11.82□□□□□ -0.52
ZEB1-220ENST00000560909 ZRANB1Q9UGI0 708 aa11.81□□□□□ -0.52
ZEB1-220ENST00000560909 FBLN2P98095 1184 aa11.8□□□□□ -0.52
ZEB1-220ENST00000560909 POTEJP0CG39 1038 aa11.79□□□□□ -0.52
ZEB1-220ENST00000560909 MAMSTRQ6ZN01 415 aa11.76□□□□□ -0.53
ZEB1-220ENST00000560909 PELP1Q8IZL8 1130 aaKnown RBP11.76□□□□□ -0.53
ZEB1-220ENST00000560909 METRNQ9UJH8 293 aa11.7□□□□□ -0.54
ZEB1-220ENST00000560909 MMRN1Q13201 1228 aa11.67□□□□□ -0.54
ZEB1-220ENST00000560909 SCUBE2Q9NQ36 999 aa11.64□□□□□ -0.55
ZEB1-220ENST00000560909 PABPN1Q86U42 306 aaKnown RBP eCLIP11.61□□□□□ -0.55
ZEB1-220ENST00000560909 C7P10643 843 aa11.59□□□□□ -0.55
ZEB1-220ENST00000560909 SLC39A7Q92504 469 aa11.59□□□□□ -0.55
ZEB1-220ENST00000560909 MKRN4PQ13434 485 aaPredicted RBP11.56□□□□□ -0.56
ZEB1-220ENST00000560909 SPNS2Q8IVW8 549 aa11.55□□□□□ -0.56
ZEB1-220ENST00000560909 PHF12Q96QT6 1004 aa11.55□□□□□ -0.56
ZEB1-220ENST00000560909 FOXD4L1Q9NU39 408 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms