Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.34□□□□□ -0.27
RHBDD3Q9Y3P4 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC13.34□□□□□ -0.27
RHBDD3Q9Y3P4 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
RHBDD3Q9Y3P4 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RHBDD3Q9Y3P4 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
RHBDD3Q9Y3P4 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
RHBDD3Q9Y3P4 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
RHBDD3Q9Y3P4 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RHBDD3Q9Y3P4 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
RHBDD3Q9Y3P4 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
RHBDD3Q9Y3P4 MTHFR-210ENST00000641407 2387 ntBASIC13.34□□□□□ -0.27
RHBDD3Q9Y3P4 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
RHBDD3Q9Y3P4 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
RHBDD3Q9Y3P4 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
RHBDD3Q9Y3P4 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.27
RHBDD3Q9Y3P4 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 PNMT-202ENST00000394246 821 ntTSL 2 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 AC114501.2-201ENST00000439631 535 ntBASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 AC025181.2-201ENST00000606994 802 ntBASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 BBS1-225ENST00000630659 1934 ntTSL 5 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 WDR33-201ENST00000322313 9471 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
RHBDD3Q9Y3P4 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 USP28-214ENST00000545540 3431 ntTSL 2 BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 BTBD7P1-201ENST00000447253 1453 ntBASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 SERF2-217ENST00000630046 862 ntTSL 5 BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 SLC9A7P1-202ENST00000556476 2239 ntBASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
RHBDD3Q9Y3P4 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
RHBDD3Q9Y3P4 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
RHBDD3Q9Y3P4 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms