Protein–RNA interactions for Protein: Q9P0L0

VAPA, Vesicle-associated membrane protein-associated protein A, humanhuman

Predictions only

Length 249 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAPAQ9P0L0 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 HLA-K-203ENST00000430151 1046 ntBASIC14.34□□□□□ -0.11
VAPAQ9P0L0 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 HLA-J-203ENST00000494367 1087 ntBASIC14.34□□□□□ -0.11
VAPAQ9P0L0 AC022447.6-201ENST00000515522 438 ntBASIC14.34□□□□□ -0.11
VAPAQ9P0L0 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
VAPAQ9P0L0 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
VAPAQ9P0L0 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.33□□□□□ -0.11
VAPAQ9P0L0 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
VAPAQ9P0L0 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
VAPAQ9P0L0 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
VAPAQ9P0L0 PPP1R26P4-201ENST00000619065 3527 ntBASIC14.33□□□□□ -0.11
VAPAQ9P0L0 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
VAPAQ9P0L0 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
VAPAQ9P0L0 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
VAPAQ9P0L0 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.33□□□□□ -0.11
VAPAQ9P0L0 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC14.33□□□□□ -0.11
VAPAQ9P0L0 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
VAPAQ9P0L0 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
VAPAQ9P0L0 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.33□□□□□ -0.11
VAPAQ9P0L0 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.33□□□□□ -0.11
VAPAQ9P0L0 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 BX842568.4-201ENST00000421222 227 ntBASIC14.33□□□□□ -0.12
VAPAQ9P0L0 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 DHDH-204ENST00000523250 634 ntTSL 5 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 AL844908.2-201ENST00000609461 460 ntBASIC14.33□□□□□ -0.12
VAPAQ9P0L0 AL158212.4-201ENST00000624062 1286 ntBASIC14.33□□□□□ -0.12
VAPAQ9P0L0 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 AC087499.5-201ENST00000452760 1342 ntBASIC14.33□□□□□ -0.12
VAPAQ9P0L0 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.33□□□□□ -0.12
VAPAQ9P0L0 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC14.33□□□□□ -0.12
VAPAQ9P0L0 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VAPAQ9P0L0 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
VAPAQ9P0L0 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VAPAQ9P0L0 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VAPAQ9P0L0 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
VAPAQ9P0L0 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC14.32□□□□□ -0.12
VAPAQ9P0L0 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.32□□□□□ -0.12
VAPAQ9P0L0 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC14.32□□□□□ -0.12
VAPAQ9P0L0 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms