RNA–Protein interactions for RNA: ENST00000527733.5

USP47-207, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene USP47, Length 4,525 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-207ENST00000527733 NISCHQ9Y2I1 1504 aa28.68■■■□□ 2.18
USP47-207ENST00000527733 DCAF8L2P0C7V8 631 aa27.41■■□□□ 1.98
USP47-207ENST00000527733 SHROOM4Q9ULL8 1493 aa25.89■■□□□ 1.73
USP47-207ENST00000527733 SUPT5HO00267 1087 aaKnown RBP25.8■■□□□ 1.72
USP47-207ENST00000527733 ABCC9O60706 1549 aa24.49■■□□□ 1.51
USP47-207ENST00000527733 EHMT2Q96KQ7 1210 aa24.33■■□□□ 1.49
USP47-207ENST00000527733 FAM9AQ8IZU1 332 aaPredicted RBP24.14■■□□□ 1.45
USP47-207ENST00000527733 TRIM41Q8WV44 630 aa24.08■■□□□ 1.44
USP47-207ENST00000527733 CCDC180Q9P1Z9 1646 aa24.04■■□□□ 1.44
USP47-207ENST00000527733 PABPN1Q86U42 306 aaKnown RBP eCLIP23.88■■□□□ 1.41
USP47-207ENST00000527733 APLP2Q06481 763 aa23.84■■□□□ 1.41
USP47-207ENST00000527733 ZCCHC6Q5VYS8 1495 aaKnown RBP23.82■■□□□ 1.4
USP47-207ENST00000527733 UBTFP17480 764 aaKnown RBP23.55■■□□□ 1.36
USP47-207ENST00000527733 RANGAP1P46060 587 aaPredicted RBP23.53■■□□□ 1.36
USP47-207ENST00000527733 CHIC1Q5VXU3 224 aa23.47■■□□□ 1.35
USP47-207ENST00000527733 SCRIBQ14160 1630 aa23.4■■□□□ 1.34
USP47-207ENST00000527733 TTBK1Q5TCY1 1321 aaPredicted RBP23.38■■□□□ 1.33
USP47-207ENST00000527733 PCGF6Q9BYE7 350 aa23.27■■□□□ 1.32
USP47-207ENST00000527733 ATP1B4Q9UN42 357 aaPredicted RBP23.25■■□□□ 1.31
USP47-207ENST00000527733 RB1CC1Q8TDY2 1594 aa23.23■■□□□ 1.31
USP47-207ENST00000527733 NACADO15069 1562 aa23.15■■□□□ 1.3
USP47-207ENST00000527733 LOC105371045A0A1W2PR82 267 aa23.07■■□□□ 1.28
USP47-207ENST00000527733 DCAF1Q9Y4B6 1507 aa23.02■■□□□ 1.28
USP47-207ENST00000527733 PPARGC1BQ86YN6 1023 aaKnown RBP22.86■■□□□ 1.25
USP47-207ENST00000527733 CCER1Q8TC90 406 aaPredicted RBP22.8■■□□□ 1.24
USP47-207ENST00000527733 ZEB1P37275 1124 aaPredicted RBP22.73■■□□□ 1.23
USP47-207ENST00000527733 TRIM26Q12899 539 aaPredicted RBP22.72■■□□□ 1.23
USP47-207ENST00000527733 RSF1Q96T23 1441 aaPredicted RBP22.68■■□□□ 1.22
USP47-207ENST00000527733 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.68■■□□□ 1.22
USP47-207ENST00000527733 HNRNPUL2Q1KMD3 747 aaKnown RBP22.68■■□□□ 1.22
USP47-207ENST00000527733 CSRNP3Q8WYN3 585 aa22.56■■□□□ 1.2
USP47-207ENST00000527733 MYO15BQ96JP2 1530 aa22.54■■□□□ 1.2
USP47-207ENST00000527733 ITGAEP38570 1179 aa22.47■■□□□ 1.19
USP47-207ENST00000527733 BAZ1AQ9NRL2 1556 aaPredicted RBP22.45■■□□□ 1.18
USP47-207ENST00000527733 CECR2Q9BXF3 1484 aa22.43■■□□□ 1.18
USP47-207ENST00000527733 FBLN2P98095 1184 aa22.42■■□□□ 1.18
USP47-207ENST00000527733 BAZ1BQ9UIG0 1483 aaKnown RBP22.4■■□□□ 1.18
USP47-207ENST00000527733 MYT1LQ9UL68 1186 aa22.28■■□□□ 1.16
USP47-207ENST00000527733 MROH2BQ7Z745 1585 aa22.16■■□□□ 1.14
USP47-207ENST00000527733 P3H3Q8IVL6 736 aa22.16■■□□□ 1.14
USP47-207ENST00000527733 FAM50AQ14320 339 aaKnown RBP22.15■■□□□ 1.14
USP47-207ENST00000527733 WRNQ14191 1432 aaPredicted RBP eCLIP22.09■■□□□ 1.13
USP47-207ENST00000527733 HRCP23327 699 aa22.09■■□□□ 1.13
USP47-207ENST00000527733 SMARCA2P51531 1590 aa22.01■■□□□ 1.11
USP47-207ENST00000527733 EEA1Q15075 1411 aa21.99■■□□□ 1.11
USP47-207ENST00000527733 ARID3CA6NKF2 412 aa21.93■■□□□ 1.1
USP47-207ENST00000527733 PELP1Q8IZL8 1130 aaKnown RBP21.92■■□□□ 1.1
USP47-207ENST00000527733 CDK11AQ9UQ88 783 aaPredicted RBP21.91■■□□□ 1.1
USP47-207ENST00000527733 CCDC88BA6NC98 1476 aa21.91■■□□□ 1.1
USP47-207ENST00000527733 CENPBP07199 599 aaPredicted RBP21.89■■□□□ 1.1
USP47-207ENST00000527733 CHMP7Q8WUX9 453 aaPredicted RBP21.87■■□□□ 1.09
USP47-207ENST00000527733 TRIM52Q96A61 297 aa21.86■■□□□ 1.09
USP47-207ENST00000527733 KIF27Q86VH2 1401 aa21.85■■□□□ 1.09
USP47-207ENST00000527733 WIZO95785 1651 aa21.81■■□□□ 1.08
USP47-207ENST00000527733 TOP2AP11388 1531 aaKnown RBP21.8■■□□□ 1.08
USP47-207ENST00000527733 ATAD2BQ9ULI0 1458 aa21.79■■□□□ 1.08
USP47-207ENST00000527733 ERCC6Q03468 1493 aa21.78■■□□□ 1.08
USP47-207ENST00000527733 GOLGA3Q08378 1498 aa21.77■■□□□ 1.08
USP47-207ENST00000527733 CLIP1P30622 1438 aa21.77■■□□□ 1.08
USP47-207ENST00000527733 SMARCA4P51532 1647 aa21.76■■□□□ 1.07
USP47-207ENST00000527733 ZNF777Q9ULD5 760 aaPredicted RBP21.68■■□□□ 1.06
USP47-207ENST00000527733 POLR3GLQ9BT43 218 aa21.68■■□□□ 1.06
USP47-207ENST00000527733 CEP164Q9UPV0 1460 aa21.67■■□□□ 1.06
USP47-207ENST00000527733 PDS5BQ9NTI5 1447 aa21.66■■□□□ 1.06
USP47-207ENST00000527733 NEUROD1Q13562 356 aa21.65■■□□□ 1.06
USP47-207ENST00000527733 CEP162Q5TB80 1403 aa21.64■■□□□ 1.05
USP47-207ENST00000527733 NPM1P06748 294 aaKnown RBP eCLIP21.63■■□□□ 1.05
USP47-207ENST00000527733 TNIKQ9UKE5 1360 aa21.63■■□□□ 1.05
USP47-207ENST00000527733 CADPSQ9ULU8 1353 aa21.63■■□□□ 1.05
USP47-207ENST00000527733 YTHDC1Q96MU7 727 aaKnown RBP21.62■■□□□ 1.05
USP47-207ENST00000527733 CUX2O14529 1486 aa21.59■■□□□ 1.05
USP47-207ENST00000527733 SOGA1O94964 1423 aa21.58■■□□□ 1.05
USP47-207ENST00000527733 ABCC8Q09428 1581 aa21.57■■□□□ 1.04
USP47-207ENST00000527733 MTUS2Q5JR59 1369 aa21.56■■□□□ 1.04
USP47-207ENST00000527733 CARMIL1Q5VZK9 1371 aa21.52■■□□□ 1.04
USP47-207ENST00000527733 NCAPD3P42695 1498 aa21.42■■□□□ 1.02
USP47-207ENST00000527733 NEFLP07196 543 aa21.41■■□□□ 1.02
USP47-207ENST00000527733 ZNF326Q5BKZ1 582 aaKnown RBP21.41■■□□□ 1.02
USP47-207ENST00000527733 EIF4G1Q04637 1599 aaKnown RBP21.4■■□□□ 1.02
USP47-207ENST00000527733 DIEXFQ68CQ4 756 aaKnown RBP21.4■■□□□ 1.02
USP47-207ENST00000527733 CNGB1Q14028 1251 aaPredicted RBP21.38■■□□□ 1.01
USP47-207ENST00000527733 TDRD9Q8NDG6 1382 aaKnown RBP21.37■■□□□ 1.01
USP47-207ENST00000527733 PLEKHD1A6NEE1 506 aa21.37■■□□□ 1.01
USP47-207ENST00000527733 CHIC2Q9UKJ5 165 aa21.35■■□□□ 1.01
USP47-207ENST00000527733 TSPY4P0CV99 314 aa21.35■■□□□ 1.01
USP47-207ENST00000527733 TSPY10P0CW01 314 aa21.35■■□□□ 1.01
USP47-207ENST00000527733 FANCD2Q9BXW9 1451 aa21.3■■□□□ 1
USP47-207ENST00000527733 SLC4A1APQ9BWU0 796 aaKnown RBP21.3■■□□□ 1
USP47-207ENST00000527733 FHAD1B1AJZ9 1412 aa21.27■□□□□ 0.99
USP47-207ENST00000527733 KCNH8Q96L42 1107 aa21.26■□□□□ 0.99
USP47-207ENST00000527733 ZNF316A6NFI3 1004 aaPredicted RBP21.23■□□□□ 0.99
USP47-207ENST00000527733 ESF1Q9H501 851 aaKnown RBP21.19■□□□□ 0.98
USP47-207ENST00000527733 TONSLQ96HA7 1378 aa21.19■□□□□ 0.98
USP47-207ENST00000527733 CFDP1Q9UEE9 299 aaPredicted RBP21.16■□□□□ 0.98
USP47-207ENST00000527733 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.14■□□□□ 0.978e-7■□□□□ 9
USP47-207ENST00000527733 BICRAQ9NZM4 1560 aa21.14■□□□□ 0.97
USP47-207ENST00000527733 VPS8Q8N3P4 1428 aa21.13■□□□□ 0.97
USP47-207ENST00000527733 RRP7BPQ9NSQ0 103 aa21.12■□□□□ 0.97
USP47-207ENST00000527733 RAPGEF2Q9Y4G8 1499 aa21.12■□□□□ 0.97
USP47-207ENST00000527733 ANP32CO43423 234 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms