Protein–RNA interactions for Protein: Q9H1A7

POLR2J3, DNA-directed RNA polymerase II subunit RPB11-b2, humanhuman

Known RBP Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3Q9H1A7 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
POLR2J3Q9H1A7 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC14.08□□□□□ -0.15
POLR2J3Q9H1A7 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
POLR2J3Q9H1A7 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
POLR2J3Q9H1A7 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.08□□□□□ -0.15
POLR2J3Q9H1A7 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.08□□□□□ -0.15
POLR2J3Q9H1A7 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 SUN1-204ENST00000403868 978 ntTSL 2 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 AC004967.1-201ENST00000453589 447 ntBASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 AC067863.1-201ENST00000494933 530 ntBASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 AC004066.1-201ENST00000502488 802 ntBASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 TIMM17BP1-201ENST00000545713 516 ntBASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 AC025678.2-201ENST00000562061 970 ntBASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 AC140878.1-201ENST00000565277 250 ntBASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 AC092337.1-201ENST00000568699 1129 ntBASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 AL109936.8-201ENST00000641772 604 ntBASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 AC018442.1-201ENST00000421439 2061 ntBASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
POLR2J3Q9H1A7 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 AC005840.4-201ENST00000541242 2494 ntBASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 AC027601.5-201ENST00000624065 2482 ntBASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 AC104581.4-201ENST00000623126 3052 ntBASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 TSEN15P1-201ENST00000423257 515 ntBASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 KLF2P3-201ENST00000451977 1087 ntBASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 AC125807.1-201ENST00000483097 614 ntBASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 AC134684.3-201ENST00000641758 218 ntBASIC14.07□□□□□ -0.16
POLR2J3Q9H1A7 AC079781.4-201ENST00000641908 219 ntBASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms