Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
RFC4P35249 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RFC4P35249 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RFC4P35249 AC015909.3-201ENST00000572855 1794 ntBASIC18.81■□□□□ 0.6
RFC4P35249 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
RFC4P35249 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
RFC4P35249 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
RFC4P35249 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFC4P35249 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.8■□□□□ 0.6
RFC4P35249 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RFC4P35249 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RFC4P35249 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
RFC4P35249 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFC4P35249 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC18.8■□□□□ 0.6
RFC4P35249 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFC4P35249 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC18.8■□□□□ 0.6
RFC4P35249 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
RFC4P35249 AL583805.1-201ENST00000391389 531 ntBASIC18.8■□□□□ 0.6
RFC4P35249 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC18.8■□□□□ 0.6
RFC4P35249 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFC4P35249 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFC4P35249 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
RFC4P35249 AP000358.1-201ENST00000456260 156 ntBASIC18.8■□□□□ 0.6
RFC4P35249 AC006122.1-201ENST00000493323 440 ntBASIC18.8■□□□□ 0.6
RFC4P35249 IGHV3-37-201ENST00000518544 340 ntBASIC18.8■□□□□ 0.6
RFC4P35249 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC18.8■□□□□ 0.6
RFC4P35249 PHBP15-201ENST00000574228 665 ntBASIC18.8■□□□□ 0.6
RFC4P35249 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
RFC4P35249 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC18.8■□□□□ 0.6
RFC4P35249 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFC4P35249 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFC4P35249 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFC4P35249 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFC4P35249 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC18.8■□□□□ 0.6
RFC4P35249 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
RFC4P35249 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC18.8■□□□□ 0.6
RFC4P35249 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC18.8■□□□□ 0.6
RFC4P35249 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.8■□□□□ 0.6
RFC4P35249 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RFC4P35249 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RFC4P35249 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
RFC4P35249 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC18.79■□□□□ 0.6
RFC4P35249 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC4P35249 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC4P35249 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC18.79■□□□□ 0.6
RFC4P35249 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC4P35249 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC4P35249 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
RFC4P35249 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC18.79■□□□□ 0.6
RFC4P35249 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
RFC4P35249 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC4P35249 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC4P35249 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
RFC4P35249 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC18.79■□□□□ 0.6
RFC4P35249 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RFC4P35249 ALG3P1-201ENST00000508806 1114 ntBASIC18.79■□□□□ 0.6
RFC4P35249 PTK2-225ENST00000520892 571 ntTSL 4 BASIC18.79■□□□□ 0.6
RFC4P35249 RPL17P45-201ENST00000586289 509 ntBASIC18.79■□□□□ 0.6
RFC4P35249 HPN-206ENST00000597419 1212 ntTSL 5 BASIC18.79■□□□□ 0.6
RFC4P35249 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC18.79■□□□□ 0.6
RFC4P35249 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
RFC4P35249 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC18.79■□□□□ 0.6
RFC4P35249 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC18.79■□□□□ 0.6
RFC4P35249 PRORSD1P-202ENST00000563365 2154 ntBASIC18.79■□□□□ 0.6
RFC4P35249 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
RFC4P35249 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
RFC4P35249 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.79■□□□□ 0.6
RFC4P35249 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC4P35249 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC4P35249 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC4P35249 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RFC4P35249 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
RFC4P35249 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
RFC4P35249 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.79■□□□□ 0.6
RFC4P35249 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFC4P35249 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RFC4P35249 AC003102.2-201ENST00000589195 1469 ntBASIC18.78■□□□□ 0.6
RFC4P35249 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC18.78■□□□□ 0.6
RFC4P35249 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFC4P35249 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.78■□□□□ 0.6
RFC4P35249 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFC4P35249 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFC4P35249 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RFC4P35249 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFC4P35249 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RFC4P35249 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC18.78■□□□□ 0.6
RFC4P35249 WT1-209ENST00000530998 2421 ntTSL 2 BASIC18.78■□□□□ 0.6
RFC4P35249 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFC4P35249 APOA1-202ENST00000359492 932 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
RFC4P35249 SOD2-202ENST00000367054 815 ntTSL 2 BASIC18.78■□□□□ 0.6
RFC4P35249 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
RFC4P35249 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
RFC4P35249 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC18.78■□□□□ 0.6
RFC4P35249 AC012362.1-201ENST00000434906 739 ntBASIC18.78■□□□□ 0.6
RFC4P35249 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC18.78■□□□□ 0.6
RFC4P35249 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC18.78■□□□□ 0.6
RFC4P35249 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC18.78■□□□□ 0.6
RFC4P35249 PIN4P1-201ENST00000451079 396 ntBASIC18.78■□□□□ 0.6
RFC4P35249 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RFC4P35249 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms