Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC139887.3-201ENST00000568585 713 ntBASIC11.48□□□□□ -0.57
HLA-DQA1P01909 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 IRF5-214ENST00000613821 595 ntTSL 5 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 GGTLC5P-201ENST00000617623 998 ntBASIC11.48□□□□□ -0.57
HLA-DQA1P01909 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 APBB1-201ENST00000299402 2636 ntAPPRIS P3 TSL 5 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 TMX4-201ENST00000246024 6169 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 YWHAZ-206ENST00000395957 5248 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 MICB-202ENST00000399150 2346 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 AL691432.1-201ENST00000596308 1422 ntBASIC11.47□□□□□ -0.57
HLA-DQA1P01909 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 ARTN-206ENST00000472435 402 ntTSL 3 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 KRT18P34-201ENST00000488218 1270 ntBASIC11.47□□□□□ -0.57
HLA-DQA1P01909 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 TOLLIP-AS1-201ENST00000530897 939 ntBASIC11.47□□□□□ -0.57
HLA-DQA1P01909 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 AC002347.1-201ENST00000569543 541 ntBASIC11.47□□□□□ -0.57
HLA-DQA1P01909 SERF2-217ENST00000630046 862 ntTSL 5 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 NLRP2B-201ENST00000434992 3194 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 NLRP13-201ENST00000342929 3132 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 AL356258.1-201ENST00000605929 2246 ntTSL 2 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 EML5-207ENST00000554922 9570 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
HLA-DQA1P01909 SNED1-201ENST00000310397 8174 ntAPPRIS P2 TSL 5 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC11.46□□□□□ -0.57
HLA-DQA1P01909 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms