RNA–Protein interactions for RNA: ENST00000310397.12

SNED1-201, Transcript of sushi, nidogen and EGF like domains 1, humanhuman

APPRIS P2 TSL 5 BASIC

Gene SNED1, Length 8,174 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1-201ENST00000310397 DCAF8L2P0C7V8 631 aa21.85■■□□□ 1.09
SNED1-201ENST00000310397 NISCHQ9Y2I1 1504 aa21.73■■□□□ 1.07
SNED1-201ENST00000310397 SUPT5HO00267 1087 aaKnown RBP21.31■■□□□ 1
SNED1-201ENST00000310397 PELP1Q8IZL8 1130 aaKnown RBP21.03■□□□□ 0.96
SNED1-201ENST00000310397 SHROOM4Q9ULL8 1493 aa20.84■□□□□ 0.93
SNED1-201ENST00000310397 PCGF6Q9BYE7 350 aa20.43■□□□□ 0.86
SNED1-201ENST00000310397 ZEB1P37275 1124 aaPredicted RBP20.41■□□□□ 0.86
SNED1-201ENST00000310397 APLP2Q06481 763 aa20.37■□□□□ 0.85
SNED1-201ENST00000310397 CENPBP07199 599 aaPredicted RBP20.33■□□□□ 0.85
SNED1-201ENST00000310397 EHMT2Q96KQ7 1210 aa20.33■□□□□ 0.85
SNED1-201ENST00000310397 MYT1Q01538 1121 aa20.29■□□□□ 0.84
SNED1-201ENST00000310397 CCER1Q8TC90 406 aaPredicted RBP20.03■□□□□ 0.8
SNED1-201ENST00000310397 FAM9AQ8IZU1 332 aaPredicted RBP19.99■□□□□ 0.79
SNED1-201ENST00000310397 ERICH6Q7L0X2 663 aa19.94■□□□□ 0.78
SNED1-201ENST00000310397 TRIM41Q8WV44 630 aa19.87■□□□□ 0.77
SNED1-201ENST00000310397 TTBK1Q5TCY1 1321 aaPredicted RBP19.78■□□□□ 0.76
SNED1-201ENST00000310397 HRCP23327 699 aa19.71■□□□□ 0.75
SNED1-201ENST00000310397 TRIM26Q12899 539 aaPredicted RBP19.7■□□□□ 0.74
SNED1-201ENST00000310397 NEFLP07196 543 aa19.69■□□□□ 0.74
SNED1-201ENST00000310397 UBTFP17480 764 aaKnown RBP19.54■□□□□ 0.72
SNED1-201ENST00000310397 YTHDC1Q96MU7 727 aaKnown RBP19.49■□□□□ 0.71
SNED1-201ENST00000310397 RANGAP1P46060 587 aaPredicted RBP19.39■□□□□ 0.69
SNED1-201ENST00000310397 ATP1B4Q9UN42 357 aaPredicted RBP19.28■□□□□ 0.68
SNED1-201ENST00000310397 CHIC1Q5VXU3 224 aa19.21■□□□□ 0.67
SNED1-201ENST00000310397 PPARGC1BQ86YN6 1023 aaKnown RBP19.18■□□□□ 0.66
SNED1-201ENST00000310397 LOC105371045A0A1W2PR82 267 aa19.11■□□□□ 0.65
SNED1-201ENST00000310397 DIEXFQ68CQ4 756 aaKnown RBP19.06■□□□□ 0.64
SNED1-201ENST00000310397 DAXXQ9UER7 740 aaPredicted RBP19.06■□□□□ 0.64
SNED1-201ENST00000310397 HNRNPUL2Q1KMD3 747 aaKnown RBP18.88■□□□□ 0.61
SNED1-201ENST00000310397 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.85■□□□□ 0.61
SNED1-201ENST00000310397 ITGAEP38570 1179 aa18.82■□□□□ 0.6
SNED1-201ENST00000310397 RTL5Q5HYW3 569 aaPredicted RBP18.8■□□□□ 0.6
SNED1-201ENST00000310397 GTF3C3Q9Y5Q9 886 aa18.75■□□□□ 0.59
SNED1-201ENST00000310397 POLR3GLQ9BT43 218 aa18.66■□□□□ 0.58
SNED1-201ENST00000310397 ZNF316A6NFI3 1004 aaPredicted RBP18.62■□□□□ 0.57
SNED1-201ENST00000310397 ACIN1Q9UKV3 1341 aaKnown RBP18.57■□□□□ 0.56
SNED1-201ENST00000310397 CLSPNQ9HAW4 1339 aa18.55■□□□□ 0.56
SNED1-201ENST00000310397 CDK11AQ9UQ88 783 aaPredicted RBP18.53■□□□□ 0.56
SNED1-201ENST00000310397 ANP32CO43423 234 aa18.5■□□□□ 0.55
SNED1-201ENST00000310397 DCAF1Q9Y4B6 1507 aa18.49■□□□□ 0.55
SNED1-201ENST00000310397 FAM50AQ14320 339 aaKnown RBP18.43■□□□□ 0.54
SNED1-201ENST00000310397 CNGB1Q14028 1251 aaPredicted RBP18.4■□□□□ 0.54
SNED1-201ENST00000310397 BCANQ96GW7 911 aa18.36■□□□□ 0.53
SNED1-201ENST00000310397 NEUROD1Q13562 356 aa18.34■□□□□ 0.53
SNED1-201ENST00000310397 MYT1LQ9UL68 1186 aa18.33■□□□□ 0.53
SNED1-201ENST00000310397 TRIM52Q96A61 297 aa18.26■□□□□ 0.51
SNED1-201ENST00000310397 ANP32AP39687 249 aaKnown RBP18.24■□□□□ 0.51
SNED1-201ENST00000310397 SLC4A1APQ9BWU0 796 aaKnown RBP18.2■□□□□ 0.5
SNED1-201ENST00000310397 CSRNP3Q8WYN3 585 aa18.11■□□□□ 0.49
SNED1-201ENST00000310397 CCDC180Q9P1Z9 1646 aa18.1■□□□□ 0.49
SNED1-201ENST00000310397 ZBTB47Q9UFB7 747 aaPredicted RBP18.06■□□□□ 0.48
SNED1-201ENST00000310397 ZCCHC6Q5VYS8 1495 aaKnown RBP18.05■□□□□ 0.48
SNED1-201ENST00000310397 FKBP8Q14318 412 aa18.04■□□□□ 0.48
SNED1-201ENST00000310397 ABCC9O60706 1549 aa18.01■□□□□ 0.47
SNED1-201ENST00000310397 ZNF326Q5BKZ1 582 aaKnown RBP18■□□□□ 0.47
SNED1-201ENST00000310397 SCAF1Q9H7N4 1312 aaKnown RBP18■□□□□ 0.47
SNED1-201ENST00000310397 CANXP27824 592 aaKnown RBP17.98■□□□□ 0.47
SNED1-201ENST00000310397 TONSLQ96HA7 1378 aa17.95■□□□□ 0.46
SNED1-201ENST00000310397 SCRIBQ14160 1630 aa17.95■□□□□ 0.46
SNED1-201ENST00000310397 HNRNPUQ00839 825 aaKnown RBP eCLIP17.9■□□□□ 0.46
SNED1-201ENST00000310397 ANP32BQ92688 251 aaKnown RBP17.88■□□□□ 0.45
SNED1-201ENST00000310397 GLIPR1L2Q4G1C9 344 aa17.87■□□□□ 0.45
SNED1-201ENST00000310397 NPM2Q86SE8 214 aaKnown RBP17.86■□□□□ 0.45
SNED1-201ENST00000310397 NEFMP07197 916 aa17.85■□□□□ 0.45
SNED1-201ENST00000310397 PABPN1Q86U42 306 aaKnown RBP eCLIP17.85■□□□□ 0.45
SNED1-201ENST00000310397 UPF2Q9HAU5 1272 aaKnown RBP17.84■□□□□ 0.45
SNED1-201ENST00000310397 DDX10Q13206 875 aaKnown RBP17.84■□□□□ 0.45
SNED1-201ENST00000310397 EIF5BO60841 1220 aaKnown RBP17.83■□□□□ 0.44
SNED1-201ENST00000310397 CCDC136Q96JN2 1154 aa17.78■□□□□ 0.44
SNED1-201ENST00000310397 MIER1Q8N108 512 aa17.77■□□□□ 0.44
SNED1-201ENST00000310397 MYO15BQ96JP2 1530 aa17.76■□□□□ 0.43
SNED1-201ENST00000310397 HSP90AA1P07900 732 aaKnown RBP17.73■□□□□ 0.43
SNED1-201ENST00000310397 FAM9BQ8IZU0 186 aa17.73■□□□□ 0.43
SNED1-201ENST00000310397 P3H3Q8IVL6 736 aa17.72■□□□□ 0.43
SNED1-201ENST00000310397 TMC1Q8TDI8 760 aa17.7■□□□□ 0.42
SNED1-201ENST00000310397 NBR1Q14596 966 aa17.69■□□□□ 0.42
SNED1-201ENST00000310397 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.69■□□□□ 0.42
SNED1-201ENST00000310397 EEA1Q15075 1411 aa17.69■□□□□ 0.42
SNED1-201ENST00000310397 CLIP1P30622 1438 aa17.64■□□□□ 0.41
SNED1-201ENST00000310397 ANP32EQ9BTT0 268 aa17.62■□□□□ 0.41
SNED1-201ENST00000310397 MRS2Q9HD23 443 aa17.61■□□□□ 0.41
SNED1-201ENST00000310397 GOLGA3Q08378 1498 aa17.59■□□□□ 0.41
SNED1-201ENST00000310397 DDRGK1Q96HY6 314 aa17.57■□□□□ 0.4
SNED1-201ENST00000310397 CEP162Q5TB80 1403 aa17.57■□□□□ 0.4
SNED1-201ENST00000310397 BCL11AQ9H165 835 aa17.57■□□□□ 0.4
SNED1-201ENST00000310397 ZNF777Q9ULD5 760 aaPredicted RBP17.56■□□□□ 0.4
SNED1-201ENST00000310397 FBLN2P98095 1184 aa17.55■□□□□ 0.4
SNED1-201ENST00000310397 EIF4G2P78344 907 aaKnown RBP eCLIP17.53■□□□□ 0.4
SNED1-201ENST00000310397 SLC24A1O60721 1099 aa17.53■□□□□ 0.4
SNED1-201ENST00000310397 WDR43Q15061 677 aaKnown RBP eCLIP17.5■□□□□ 0.39
SNED1-201ENST00000310397 MTUS2Q5JR59 1369 aa17.5■□□□□ 0.39
SNED1-201ENST00000310397 BECN1Q14457 450 aa17.49■□□□□ 0.39
SNED1-201ENST00000310397 ARID3CA6NKF2 412 aa17.48■□□□□ 0.39
SNED1-201ENST00000310397 SALL2Q9Y467 1007 aaPredicted RBP17.47■□□□□ 0.39
SNED1-201ENST00000310397 IRX6P78412 446 aaPredicted RBP17.44■□□□□ 0.38
SNED1-201ENST00000310397 RB1CC1Q8TDY2 1594 aa17.44■□□□□ 0.38
SNED1-201ENST00000310397 TNIKQ9UKE5 1360 aa17.43■□□□□ 0.38
SNED1-201ENST00000310397 RSF1Q96T23 1441 aaPredicted RBP17.42■□□□□ 0.38
SNED1-201ENST00000310397 CEP164Q9UPV0 1460 aa17.41■□□□□ 0.38
SNED1-201ENST00000310397 PPM1GO15355 546 aaPredicted RBP17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms