RNA–Protein interactions for RNA: ENST00000548919.5

RAPGEF3-218, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2 BASIC

Gene RAPGEF3, Length 2,776 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-218ENST00000548919 NISCHQ9Y2I1 1504 aa28.58■■■□□ 2.17
RAPGEF3-218ENST00000548919 SHROOM4Q9ULL8 1493 aa24.81■■□□□ 1.56
RAPGEF3-218ENST00000548919 SUPT5HO00267 1087 aaKnown RBP24.42■■□□□ 1.5
RAPGEF3-218ENST00000548919 ZCCHC6Q5VYS8 1495 aaKnown RBP24.21■■□□□ 1.47
RAPGEF3-218ENST00000548919 CCDC180Q9P1Z9 1646 aa24.07■■□□□ 1.44
RAPGEF3-218ENST00000548919 DCAF8L2P0C7V8 631 aa23.88■■□□□ 1.41
RAPGEF3-218ENST00000548919 MYO15BQ96JP2 1530 aa23.82■■□□□ 1.4
RAPGEF3-218ENST00000548919 CHIC1Q5VXU3 224 aa23.78■■□□□ 1.4
RAPGEF3-218ENST00000548919 HRCP23327 699 aa23.48■■□□□ 1.35
RAPGEF3-218ENST00000548919 PCGF6Q9BYE7 350 aa23.4■■□□□ 1.34
RAPGEF3-218ENST00000548919 DCAF1Q9Y4B6 1507 aa23.31■■□□□ 1.32
RAPGEF3-218ENST00000548919 LOC105371045A0A1W2PR82 267 aa23.2■■□□□ 1.3
RAPGEF3-218ENST00000548919 PPARGC1BQ86YN6 1023 aaKnown RBP23.12■■□□□ 1.29
RAPGEF3-218ENST00000548919 ABCC9O60706 1549 aa22.9■■□□□ 1.26
RAPGEF3-218ENST00000548919 SCRIBQ14160 1630 aa22.81■■□□□ 1.24
RAPGEF3-218ENST00000548919 TRIM26Q12899 539 aaPredicted RBP22.77■■□□□ 1.24
RAPGEF3-218ENST00000548919 RSF1Q96T23 1441 aaPredicted RBP22.77■■□□□ 1.24
RAPGEF3-218ENST00000548919 TRIM41Q8WV44 630 aa22.64■■□□□ 1.22
RAPGEF3-218ENST00000548919 RB1CC1Q8TDY2 1594 aa22.61■■□□□ 1.21
RAPGEF3-218ENST00000548919 FAM9AQ8IZU1 332 aaPredicted RBP22.61■■□□□ 1.21
RAPGEF3-218ENST00000548919 EHMT2Q96KQ7 1210 aa22.52■■□□□ 1.2
RAPGEF3-218ENST00000548919 CECR2Q9BXF3 1484 aa22.38■■□□□ 1.17
RAPGEF3-218ENST00000548919 MROH2BQ7Z745 1585 aa22.3■■□□□ 1.16
RAPGEF3-218ENST00000548919 ZEB1P37275 1124 aaPredicted RBP22.3■■□□□ 1.16
RAPGEF3-218ENST00000548919 WIZO95785 1651 aa22.22■■□□□ 1.15
RAPGEF3-218ENST00000548919 NACADO15069 1562 aa22.22■■□□□ 1.15
RAPGEF3-218ENST00000548919 BAZ1AQ9NRL2 1556 aaPredicted RBP22■■□□□ 1.11
RAPGEF3-218ENST00000548919 EIF4G1Q04637 1599 aaKnown RBP21.94■■□□□ 1.1
RAPGEF3-218ENST00000548919 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.94■■□□□ 1.1
RAPGEF3-218ENST00000548919 SCAF1Q9H7N4 1312 aaKnown RBP21.88■■□□□ 1.09
RAPGEF3-218ENST00000548919 ABCC8Q09428 1581 aa21.86■■□□□ 1.09
RAPGEF3-218ENST00000548919 CCER1Q8TC90 406 aaPredicted RBP21.84■■□□□ 1.09
RAPGEF3-218ENST00000548919 TTBK1Q5TCY1 1321 aaPredicted RBP21.84■■□□□ 1.09
RAPGEF3-218ENST00000548919 CCDC88BA6NC98 1476 aa21.81■■□□□ 1.08
RAPGEF3-218ENST00000548919 TOP2AP11388 1531 aaKnown RBP21.77■■□□□ 1.07
RAPGEF3-218ENST00000548919 SMARCA4P51532 1647 aa21.72■■□□□ 1.07
RAPGEF3-218ENST00000548919 SMARCA2P51531 1590 aa21.7■■□□□ 1.06
RAPGEF3-218ENST00000548919 SOGA1O94964 1423 aa21.7■■□□□ 1.06
RAPGEF3-218ENST00000548919 CEP162Q5TB80 1403 aa21.68■■□□□ 1.06
RAPGEF3-218ENST00000548919 WRNQ14191 1432 aaPredicted RBP eCLIP21.63■■□□□ 1.05
RAPGEF3-218ENST00000548919 UNC13AQ9UPW8 1703 aa21.61■■□□□ 1.05
RAPGEF3-218ENST00000548919 RUSC2Q8N2Y8 1516 aa21.6■■□□□ 1.05
RAPGEF3-218ENST00000548919 UBTFP17480 764 aaKnown RBP21.56■■□□□ 1.04
RAPGEF3-218ENST00000548919 TNIKQ9UKE5 1360 aa21.56■■□□□ 1.04
RAPGEF3-218ENST00000548919 CSRNP3Q8WYN3 585 aa21.54■■□□□ 1.04
RAPGEF3-218ENST00000548919 DIEXFQ68CQ4 756 aaKnown RBP21.54■■□□□ 1.04
RAPGEF3-218ENST00000548919 NEUROD1Q13562 356 aa21.53■■□□□ 1.04
RAPGEF3-218ENST00000548919 ACIN1Q9UKV3 1341 aaKnown RBP21.51■■□□□ 1.03
RAPGEF3-218ENST00000548919 PELP1Q8IZL8 1130 aaKnown RBP21.51■■□□□ 1.03
RAPGEF3-218ENST00000548919 PABPN1Q86U42 306 aaKnown RBP eCLIP21.46■■□□□ 1.03
RAPGEF3-218ENST00000548919 EEA1Q15075 1411 aa21.44■■□□□ 1.02
RAPGEF3-218ENST00000548919 GOLGA3Q08378 1498 aa21.4■■□□□ 1.02
RAPGEF3-218ENST00000548919 GTF3C3Q9Y5Q9 886 aa21.33■■□□□ 1.01
RAPGEF3-218ENST00000548919 BICRAQ9NZM4 1560 aa21.3■■□□□ 1
RAPGEF3-218ENST00000548919 CENPBP07199 599 aaPredicted RBP21.3■■□□□ 1
RAPGEF3-218ENST00000548919 HNRNPUL2Q1KMD3 747 aaKnown RBP21.29■■□□□ 1
RAPGEF3-218ENST00000548919 SYNJ1O43426 1573 aa21.29■■□□□ 1
RAPGEF3-218ENST00000548919 ZNF316A6NFI3 1004 aaPredicted RBP21.27■■□□□ 1
RAPGEF3-218ENST00000548919 CEP164Q9UPV0 1460 aa21.23■□□□□ 0.99
RAPGEF3-218ENST00000548919 RANGAP1P46060 587 aaPredicted RBP21.21■□□□□ 0.99
RAPGEF3-218ENST00000548919 CLIP1P30622 1438 aa21.21■□□□□ 0.99
RAPGEF3-218ENST00000548919 PEG3Q9GZU2 1588 aa21.2■□□□□ 0.98
RAPGEF3-218ENST00000548919 KIF21BO75037 1637 aa21.18■□□□□ 0.98
RAPGEF3-218ENST00000548919 YTHDC1Q96MU7 727 aaKnown RBP21.16■□□□□ 0.98
RAPGEF3-218ENST00000548919 RAPGEF2Q9Y4G8 1499 aa21.13■□□□□ 0.97
RAPGEF3-218ENST00000548919 VPS8Q8N3P4 1428 aa21.11■□□□□ 0.97
RAPGEF3-218ENST00000548919 ATAD2BQ9ULI0 1458 aa21.11■□□□□ 0.97
RAPGEF3-218ENST00000548919 MIER1Q8N108 512 aa21.08■□□□□ 0.97
RAPGEF3-218ENST00000548919 BAZ1BQ9UIG0 1483 aaKnown RBP21.08■□□□□ 0.96
RAPGEF3-218ENST00000548919 APLP2Q06481 763 aa21.08■□□□□ 0.96
RAPGEF3-218ENST00000548919 TOP2BQ02880 1626 aa20.93■□□□□ 0.94
RAPGEF3-218ENST00000548919 KANK4Q5T7N3 995 aaPredicted RBP20.85■□□□□ 0.93
RAPGEF3-218ENST00000548919 ARAP1Q96P48 1450 aa20.84■□□□□ 0.93
RAPGEF3-218ENST00000548919 BIVM-ERCC5R4GMW8 1640 aa20.83■□□□□ 0.92
RAPGEF3-218ENST00000548919 PRXQ9BXM0 1461 aa20.81■□□□□ 0.92
RAPGEF3-218ENST00000548919 DHX57Q6P158 1386 aaKnown RBP20.8■□□□□ 0.92
RAPGEF3-218ENST00000548919 ERICH3Q5RHP9 1530 aa20.78■□□□□ 0.92
RAPGEF3-218ENST00000548919 CUX1P39880 1505 aa20.73■□□□□ 0.91
RAPGEF3-218ENST00000548919 CLSPNQ9HAW4 1339 aa20.7■□□□□ 0.9
RAPGEF3-218ENST00000548919 ITGAEP38570 1179 aa20.67■□□□□ 0.9
RAPGEF3-218ENST00000548919 KIF27Q86VH2 1401 aa20.66■□□□□ 0.9
RAPGEF3-218ENST00000548919 RRBP1Q9P2E9 1410 aaKnown RBP20.64■□□□□ 0.89
RAPGEF3-218ENST00000548919 ARHGAP35Q9NRY4 1499 aa20.61■□□□□ 0.89
RAPGEF3-218ENST00000548919 NCAPD3P42695 1498 aa20.59■□□□□ 0.89
RAPGEF3-218ENST00000548919 CCNB3Q8WWL7 1395 aa20.59■□□□□ 0.89
RAPGEF3-218ENST00000548919 HMGXB3Q12766 1538 aa20.58■□□□□ 0.89
RAPGEF3-218ENST00000548919 CFTRP13569 1480 aa20.53■□□□□ 0.88
RAPGEF3-218ENST00000548919 CUX2O14529 1486 aa20.52■□□□□ 0.88
RAPGEF3-218ENST00000548919 RAB3GAP2Q9H2M9 1393 aa20.47■□□□□ 0.87
RAPGEF3-218ENST00000548919 SUPT16HQ9Y5B9 1047 aaKnown RBP20.46■□□□□ 0.87
RAPGEF3-218ENST00000548919 IGF1RP08069 1367 aa20.45■□□□□ 0.86
RAPGEF3-218ENST00000548919 KCNH8Q96L42 1107 aa20.43■□□□□ 0.86
RAPGEF3-218ENST00000548919 MAPKBP1O60336 1514 aa20.41■□□□□ 0.86
RAPGEF3-218ENST00000548919 MYT1Q01538 1121 aa20.4■□□□□ 0.86
RAPGEF3-218ENST00000548919 TIAM1Q13009 1591 aa20.4■□□□□ 0.86
RAPGEF3-218ENST00000548919 CARMIL1Q5VZK9 1371 aa20.36■□□□□ 0.85
RAPGEF3-218ENST00000548919 P3H3Q8IVL6 736 aa20.36■□□□□ 0.85
RAPGEF3-218ENST00000548919 PHLDB1Q86UU1 1377 aa20.36■□□□□ 0.85
RAPGEF3-218ENST00000548919 FAM50AQ14320 339 aaKnown RBP20.35■□□□□ 0.85
RAPGEF3-218ENST00000548919 SIN3AQ96ST3 1273 aa20.34■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms