Protein–RNA interactions for Protein: Q9H2F9

CCDC68, Coiled-coil domain-containing protein 68, humanhuman

Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC68Q9H2F9 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 ORC5-208ENST00000626700 344 ntTSL 3 BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 AL359258.3-201ENST00000622910 2331 ntBASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC68Q9H2F9 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 AC009407.1-201ENST00000568958 598 ntBASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 SRD5A3P1-201ENST00000603021 949 ntBASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 AL158212.4-201ENST00000624062 1286 ntBASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
CCDC68Q9H2F9 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 INO80C-210ENST00000590757 595 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 AC008738.7-201ENST00000609744 511 ntBASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC68Q9H2F9 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms