Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AC073592.8-201ENST00000624126 511 ntBASIC11.44□□□□□ -0.58
LINC00477Q96M19 AL109936.8-201ENST00000641772 604 ntBASIC11.44□□□□□ -0.58
LINC00477Q96M19 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 PEG13-201ENST00000631594 5667 ntBASIC11.44□□□□□ -0.58
LINC00477Q96M19 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC11.44□□□□□ -0.58
LINC00477Q96M19 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC11.44□□□□□ -0.58
LINC00477Q96M19 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 COCH-203ENST00000460581 2688 ntTSL 2 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 LILRP1-201ENST00000444199 1370 ntBASIC11.43□□□□□ -0.58
LINC00477Q96M19 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 TUBB3P1-201ENST00000405796 1332 ntBASIC11.43□□□□□ -0.58
LINC00477Q96M19 AC087499.5-201ENST00000452760 1342 ntBASIC11.43□□□□□ -0.58
LINC00477Q96M19 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 AC069120.2-201ENST00000524091 540 ntBASIC11.43□□□□□ -0.58
LINC00477Q96M19 ZNF890P-202ENST00000530367 1156 ntBASIC11.43□□□□□ -0.58
LINC00477Q96M19 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 VPS29-207ENST00000549970 818 ntTSL 3 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 AC025678.2-201ENST00000562061 970 ntBASIC11.43□□□□□ -0.58
LINC00477Q96M19 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 AC010336.2-201ENST00000564226 506 ntBASIC11.43□□□□□ -0.58
LINC00477Q96M19 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 AC004461.2-201ENST00000629517 803 ntBASIC11.43□□□□□ -0.58
LINC00477Q96M19 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 ADAMTS7P1-201ENST00000613213 4793 ntBASIC11.43□□□□□ -0.58
LINC00477Q96M19 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC11.43□□□□□ -0.58
LINC00477Q96M19 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC11.43□□□□□ -0.58
LINC00477Q96M19 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 SF1-209ENST00000433274 2317 ntTSL 2 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC11.42□□□□□ -0.58
LINC00477Q96M19 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC11.42□□□□□ -0.58
LINC00477Q96M19 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC11.42□□□□□ -0.58
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms