Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 RN7SL828P-201ENST00000607615 303 ntBASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 AC003101.2-201ENST00000612557 442 ntBASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 AJUBA-201ENST00000262713 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 ADAMTS7P1-201ENST00000613213 4793 ntBASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
NUDCD3Q8IVD9 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 LILRP1-201ENST00000444199 1370 ntBASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 AL590627.1-203ENST00000421194 1026 ntBASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 AL133215.2-201ENST00000609242 977 ntBASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
NUDCD3Q8IVD9 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 AL359881.3-201ENST00000602640 1721 ntBASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 KRT18P64-201ENST00000434946 1219 ntBASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC15.14■□□□□ 0.01
NUDCD3Q8IVD9 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms