Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HTTP42858 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
HTTP42858 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HTTP42858 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HTTP42858 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.54■□□□□ 0.24
HTTP42858 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
HTTP42858 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HTTP42858 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.54■□□□□ 0.24
HTTP42858 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC16.54■□□□□ 0.24
HTTP42858 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HTTP42858 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HTTP42858 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC16.54■□□□□ 0.24
HTTP42858 FOXN3-AS2-201ENST00000554071 1262 ntBASIC16.54■□□□□ 0.24
HTTP42858 CYP4F36P-201ENST00000589193 186 ntBASIC16.54■□□□□ 0.24
HTTP42858 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.54■□□□□ 0.24
HTTP42858 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
HTTP42858 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HTTP42858 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.54■□□□□ 0.24
HTTP42858 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HTTP42858 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HTTP42858 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.54■□□□□ 0.24
HTTP42858 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HTTP42858 AC008536.3-201ENST00000623282 1599 ntBASIC16.54■□□□□ 0.24
HTTP42858 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.54■□□□□ 0.24
HTTP42858 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.54■□□□□ 0.24
HTTP42858 SERF2-209ENST00000409646 559 ntTSL 4 BASIC16.54■□□□□ 0.24
HTTP42858 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC16.54■□□□□ 0.24
HTTP42858 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
HTTP42858 RBM4-211ENST00000530235 1011 ntTSL 3 BASIC16.54■□□□□ 0.24
HTTP42858 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HTTP42858 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
HTTP42858 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HTTP42858 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HTTP42858 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HTTP42858 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HTTP42858 PTGER4P2-201ENST00000328411 252 ntBASIC16.53■□□□□ 0.24
HTTP42858 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC16.53■□□□□ 0.24
HTTP42858 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC16.53■□□□□ 0.24
HTTP42858 PTGER4P3-201ENST00000458150 252 ntBASIC16.53■□□□□ 0.24
HTTP42858 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HTTP42858 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC16.53■□□□□ 0.24
HTTP42858 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC16.53■□□□□ 0.24
HTTP42858 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HTTP42858 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HTTP42858 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HTTP42858 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.53■□□□□ 0.24
HTTP42858 AHCYP4-201ENST00000419201 1315 ntBASIC16.53■□□□□ 0.24
HTTP42858 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC16.53■□□□□ 0.24
HTTP42858 PYY2-201ENST00000315776 282 ntBASIC16.53■□□□□ 0.24
HTTP42858 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
HTTP42858 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HTTP42858 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC16.53■□□□□ 0.24
HTTP42858 AC108724.1-201ENST00000481669 352 ntBASIC16.53■□□□□ 0.24
HTTP42858 AL590235.1-201ENST00000564650 861 ntBASIC16.53■□□□□ 0.24
HTTP42858 TNFRSF12A-204ENST00000573001 648 ntTSL 3 BASIC16.53■□□□□ 0.24
HTTP42858 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC16.53■□□□□ 0.24
HTTP42858 BX088702.1-201ENST00000610784 235 ntBASIC16.53■□□□□ 0.24
HTTP42858 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC16.53■□□□□ 0.24
HTTP42858 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HTTP42858 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.53■□□□□ 0.24
HTTP42858 AL590440.2-201ENST00000641973 1595 ntBASIC16.53■□□□□ 0.24
HTTP42858 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HTTP42858 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HTTP42858 PHB-210ENST00000511832 1509 ntTSL 2 BASIC16.53■□□□□ 0.24
HTTP42858 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC16.53■□□□□ 0.24
HTTP42858 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HTTP42858 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HTTP42858 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HTTP42858 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HTTP42858 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
HTTP42858 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
HTTP42858 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HTTP42858 RNVU1-8-201ENST00000364272 125 ntBASIC16.52■□□□□ 0.24
HTTP42858 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC16.52■□□□□ 0.24
HTTP42858 IGHV3OR15-7-201ENST00000558565 359 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
HTTP42858 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC16.52■□□□□ 0.24
HTTP42858 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
HTTP42858 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HTTP42858 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HTTP42858 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC16.52■□□□□ 0.24
HTTP42858 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HTTP42858 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
HTTP42858 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
HTTP42858 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HTTP42858 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC16.52■□□□□ 0.24
HTTP42858 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
HTTP42858 API5-203ENST00000455725 2257 ntTSL 2 BASIC16.52■□□□□ 0.24
HTTP42858 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HTTP42858 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC16.52■□□□□ 0.24
HTTP42858 BPIFB5P-201ENST00000457066 1099 ntBASIC16.52■□□□□ 0.24
HTTP42858 AC092862.1-201ENST00000541534 533 ntBASIC16.52■□□□□ 0.24
HTTP42858 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
HTTP42858 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HTTP42858 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HTTP42858 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
HTTP42858 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HTTP42858 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
HTTP42858 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
HTTP42858 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.52■□□□□ 0.23
HTTP42858 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms