Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AC002472.2-201ENST00000442739 958 ntBASIC16.28■□□□□ 0.2
FOXN3O00409 AP001582.1-201ENST00000525856 295 ntBASIC16.28■□□□□ 0.2
FOXN3O00409 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXN3O00409 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXN3O00409 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.28■□□□□ 0.2
FOXN3O00409 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.28■□□□□ 0.2
FOXN3O00409 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.28■□□□□ 0.2
FOXN3O00409 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXN3O00409 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
FOXN3O00409 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXN3O00409 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXN3O00409 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXN3O00409 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
FOXN3O00409 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
FOXN3O00409 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
FOXN3O00409 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC16.28■□□□□ 0.2
FOXN3O00409 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXN3O00409 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
FOXN3O00409 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXN3O00409 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXN3O00409 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXN3O00409 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.27■□□□□ 0.2
FOXN3O00409 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
FOXN3O00409 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXN3O00409 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXN3O00409 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXN3O00409 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.27■□□□□ 0.2
FOXN3O00409 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC16.27■□□□□ 0.2
FOXN3O00409 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXN3O00409 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXN3O00409 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
FOXN3O00409 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXN3O00409 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
FOXN3O00409 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
FOXN3O00409 AL139094.1-201ENST00000405549 1188 ntBASIC16.27■□□□□ 0.2
FOXN3O00409 AC087499.6-201ENST00000411576 835 ntBASIC16.27■□□□□ 0.2
FOXN3O00409 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.27■□□□□ 0.2
FOXN3O00409 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.27■□□□□ 0.2
FOXN3O00409 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.27■□□□□ 0.2
FOXN3O00409 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
FOXN3O00409 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.27■□□□□ 0.2
FOXN3O00409 ELK1P1-201ENST00000485699 580 ntBASIC16.27■□□□□ 0.2
FOXN3O00409 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXN3O00409 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC16.27■□□□□ 0.2
FOXN3O00409 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.27■□□□□ 0.2
FOXN3O00409 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.27■□□□□ 0.2
FOXN3O00409 CTBP2P3-201ENST00000585629 1255 ntBASIC16.27■□□□□ 0.2
FOXN3O00409 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXN3O00409 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.27■□□□□ 0.2
FOXN3O00409 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.27■□□□□ 0.2
FOXN3O00409 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
FOXN3O00409 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
FOXN3O00409 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC16.27■□□□□ 0.19
FOXN3O00409 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC16.27■□□□□ 0.19
FOXN3O00409 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
FOXN3O00409 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
FOXN3O00409 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
FOXN3O00409 AC097359.2-201ENST00000604992 2389 ntBASIC16.27■□□□□ 0.19
FOXN3O00409 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
FOXN3O00409 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.19
FOXN3O00409 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC16.27■□□□□ 0.19
FOXN3O00409 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
FOXN3O00409 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.26■□□□□ 0.19
FOXN3O00409 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
FOXN3O00409 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC16.26■□□□□ 0.19
FOXN3O00409 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC16.26■□□□□ 0.19
FOXN3O00409 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.26■□□□□ 0.19
FOXN3O00409 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
FOXN3O00409 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
FOXN3O00409 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
FOXN3O00409 FES-203ENST00000394302 2133 ntTSL 5 BASIC16.26■□□□□ 0.19
FOXN3O00409 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.26■□□□□ 0.19
FOXN3O00409 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.26■□□□□ 0.19
FOXN3O00409 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC16.26■□□□□ 0.19
FOXN3O00409 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.26■□□□□ 0.19
FOXN3O00409 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.26■□□□□ 0.19
FOXN3O00409 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC16.26■□□□□ 0.19
FOXN3O00409 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC16.26■□□□□ 0.19
FOXN3O00409 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 AMT-204ENST00000427987 1646 ntTSL 5 BASIC16.26■□□□□ 0.19
FOXN3O00409 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.26■□□□□ 0.19
FOXN3O00409 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FOXN3O00409 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms