Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 AP006547.1-201ENST00000563435 692 ntBASIC16.3■□□□□ 0.2
CNTN3Q9P232 DERL2-202ENST00000570848 657 ntTSL 5 BASIC16.3■□□□□ 0.2
CNTN3Q9P232 MIR4741-201ENST00000579822 90 ntBASIC16.3■□□□□ 0.2
CNTN3Q9P232 EEF1DP1-201ENST00000585891 896 ntBASIC16.3■□□□□ 0.2
CNTN3Q9P232 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC16.3■□□□□ 0.2
CNTN3Q9P232 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC16.3■□□□□ 0.2
CNTN3Q9P232 AC068418.2-201ENST00000577309 3703 ntBASIC16.3■□□□□ 0.2
CNTN3Q9P232 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CNTN3Q9P232 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.3■□□□□ 0.2
CNTN3Q9P232 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CNTN3Q9P232 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.3■□□□□ 0.2
CNTN3Q9P232 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CNTN3Q9P232 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC16.3■□□□□ 0.2
CNTN3Q9P232 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CNTN3Q9P232 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.3■□□□□ 0.2
CNTN3Q9P232 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 LINC02228-204ENST00000642115 2962 ntBASIC16.29■□□□□ 0.2
CNTN3Q9P232 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 AC006486.2-201ENST00000624246 2199 ntBASIC16.29■□□□□ 0.2
CNTN3Q9P232 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 HOMER2P2-201ENST00000451621 847 ntBASIC16.29■□□□□ 0.2
CNTN3Q9P232 Z93015.1-201ENST00000451718 390 ntBASIC16.29■□□□□ 0.2
CNTN3Q9P232 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 ACR-203ENST00000529621 708 ntTSL 5 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.29■□□□□ 0.2
CNTN3Q9P232 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC16.29■□□□□ 0.2
CNTN3Q9P232 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CNTN3Q9P232 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC16.28■□□□□ 0.2
CNTN3Q9P232 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.28■□□□□ 0.2
CNTN3Q9P232 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 AP000593.2-201ENST00000542775 1433 ntBASIC16.28■□□□□ 0.2
CNTN3Q9P232 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC16.28■□□□□ 0.2
CNTN3Q9P232 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC16.28■□□□□ 0.2
CNTN3Q9P232 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC16.28■□□□□ 0.2
CNTN3Q9P232 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CNTN3Q9P232 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.28■□□□□ 0.2
CNTN3Q9P232 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 BRWD1P1-201ENST00000401091 371 ntBASIC16.28■□□□□ 0.2
CNTN3Q9P232 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC16.28■□□□□ 0.2
CNTN3Q9P232 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CNTN3Q9P232 RGS5-214ENST00000429865 754 ntTSL 3 BASIC16.28■□□□□ 0.2
CNTN3Q9P232 GOLGA2P4-201ENST00000441462 777 ntBASIC16.28■□□□□ 0.2
CNTN3Q9P232 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC16.28■□□□□ 0.2
CNTN3Q9P232 CYGB-203ENST00000589145 788 ntTSL 3 BASIC16.28■□□□□ 0.2
CNTN3Q9P232 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC16.28■□□□□ 0.2
CNTN3Q9P232 ZACNP1-201ENST00000612259 710 ntBASIC16.28■□□□□ 0.2
CNTN3Q9P232 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms