Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 BCRP1-201ENST00000444246 691 ntBASIC11.7□□□□□ -0.54
HLA-DMBP28068 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 INGX-202ENST00000489074 768 ntBASIC11.7□□□□□ -0.54
HLA-DMBP28068 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 AC015910.1-201ENST00000579400 975 ntBASIC11.7□□□□□ -0.54
HLA-DMBP28068 MIR3197-201ENST00000582241 73 ntBASIC11.7□□□□□ -0.54
HLA-DMBP28068 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 AL096865.1-201ENST00000606796 927 ntBASIC11.7□□□□□ -0.54
HLA-DMBP28068 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 AL033527.5-202ENST00000641632 1098 ntBASIC11.7□□□□□ -0.54
HLA-DMBP28068 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC11.7□□□□□ -0.54
HLA-DMBP28068 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HLA-DMBP28068 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 MTHFR-210ENST00000641407 2387 ntBASIC11.69□□□□□ -0.54
HLA-DMBP28068 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 VMA21-202ENST00000370361 693 ntTSL 5 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 WRB-204ENST00000398753 699 ntTSL 3 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 TREML5P-201ENST00000421694 576 ntBASIC11.69□□□□□ -0.54
HLA-DMBP28068 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 AL512638.1-201ENST00000457493 794 ntBASIC11.69□□□□□ -0.54
HLA-DMBP28068 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 AC069120.2-201ENST00000524091 540 ntBASIC11.69□□□□□ -0.54
HLA-DMBP28068 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HLA-DMBP28068 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 AL512361.1-201ENST00000554200 418 ntBASIC11.69□□□□□ -0.54
HLA-DMBP28068 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC11.69□□□□□ -0.54
HLA-DMBP28068 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 74.3 ms