Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 RPSAP43-201ENST00000402237 625 ntBASIC11.5□□□□□ -0.57
LINC00477Q96M19 RPL37AP1-201ENST00000412502 279 ntBASIC11.5□□□□□ -0.57
LINC00477Q96M19 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 SDHAP3-202ENST00000515467 728 ntBASIC11.5□□□□□ -0.57
LINC00477Q96M19 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 AL121723.1-201ENST00000445194 1519 ntBASIC11.5□□□□□ -0.57
LINC00477Q96M19 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
LINC00477Q96M19 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 AC007787.1-201ENST00000588095 1583 ntBASIC11.5□□□□□ -0.57
LINC00477Q96M19 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
LINC00477Q96M19 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 RN7SL618P-201ENST00000477850 296 ntBASIC11.49□□□□□ -0.57
LINC00477Q96M19 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 AL671883.3-201ENST00000603274 991 ntBASIC11.49□□□□□ -0.57
LINC00477Q96M19 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 AF228730.6-201ENST00000641497 218 ntBASIC11.49□□□□□ -0.57
LINC00477Q96M19 AC084121.3-201ENST00000641716 218 ntBASIC11.49□□□□□ -0.57
LINC00477Q96M19 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 WASHC2A-203ENST00000351071 4642 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
LINC00477Q96M19 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
LINC00477Q96M19 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms