Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC15.43■□□□□ 0.06
VIMP08670 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
VIMP08670 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
VIMP08670 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.43■□□□□ 0.06
VIMP08670 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VIMP08670 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VIMP08670 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VIMP08670 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VIMP08670 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VIMP08670 DDT-204ENST00000404092 805 ntTSL 3 BASIC15.43■□□□□ 0.06
VIMP08670 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VIMP08670 RPS8P6-201ENST00000426177 609 ntBASIC15.43■□□□□ 0.06
VIMP08670 UPK3BP1-201ENST00000428678 509 ntBASIC15.43■□□□□ 0.06
VIMP08670 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.43■□□□□ 0.06
VIMP08670 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC15.43■□□□□ 0.06
VIMP08670 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.43■□□□□ 0.06
VIMP08670 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.43■□□□□ 0.06
VIMP08670 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.43■□□□□ 0.06
VIMP08670 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC15.43■□□□□ 0.06
VIMP08670 AC091304.2-201ENST00000564639 760 ntBASIC15.43■□□□□ 0.06
VIMP08670 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC15.43■□□□□ 0.06
VIMP08670 AC097359.3-201ENST00000603982 1210 ntBASIC15.43■□□□□ 0.06
VIMP08670 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VIMP08670 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC15.43■□□□□ 0.06
VIMP08670 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
VIMP08670 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VIMP08670 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC15.43■□□□□ 0.06
VIMP08670 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC15.43■□□□□ 0.06
VIMP08670 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VIMP08670 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
VIMP08670 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC15.43■□□□□ 0.06
VIMP08670 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC15.43■□□□□ 0.06
VIMP08670 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
VIMP08670 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
VIMP08670 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.43■□□□□ 0.06
VIMP08670 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC15.43■□□□□ 0.06
VIMP08670 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
VIMP08670 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VIMP08670 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
VIMP08670 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.43■□□□□ 0.06
VIMP08670 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC15.42■□□□□ 0.06
VIMP08670 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC15.42■□□□□ 0.06
VIMP08670 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
VIMP08670 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC15.42■□□□□ 0.06
VIMP08670 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
VIMP08670 AC027612.1-201ENST00000445234 2395 ntBASIC15.42■□□□□ 0.06
VIMP08670 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VIMP08670 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.42■□□□□ 0.06
VIMP08670 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VIMP08670 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.42■□□□□ 0.06
VIMP08670 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
VIMP08670 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
VIMP08670 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VIMP08670 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.42■□□□□ 0.06
VIMP08670 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
VIMP08670 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.42■□□□□ 0.06
VIMP08670 USP4-203ENST00000415188 1454 ntTSL 3 BASIC15.42■□□□□ 0.06
VIMP08670 AC138969.3-201ENST00000546612 1459 ntBASIC15.42■□□□□ 0.06
VIMP08670 AC138932.2-201ENST00000548268 1459 ntBASIC15.42■□□□□ 0.06
VIMP08670 AC126755.4-201ENST00000549796 1459 ntBASIC15.42■□□□□ 0.06
VIMP08670 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VIMP08670 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
VIMP08670 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VIMP08670 HCG4P8-203ENST00000443049 980 ntBASIC15.42■□□□□ 0.06
VIMP08670 AC098859.1-201ENST00000502915 1238 ntBASIC15.42■□□□□ 0.06
VIMP08670 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
VIMP08670 HNRNPUP1-201ENST00000554987 333 ntBASIC15.42■□□□□ 0.06
VIMP08670 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC15.42■□□□□ 0.06
VIMP08670 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.42■□□□□ 0.06
VIMP08670 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC15.42■□□□□ 0.06
VIMP08670 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.42■□□□□ 0.06
VIMP08670 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC15.42■□□□□ 0.06
VIMP08670 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
VIMP08670 TP73-211ENST00000604074 4806 ntTSL 5 BASIC15.42■□□□□ 0.06
VIMP08670 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VIMP08670 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC15.42■□□□□ 0.06
VIMP08670 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.42■□□□□ 0.06
VIMP08670 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
VIMP08670 PPT1-213ENST00000641319 2388 ntBASIC15.42■□□□□ 0.06
VIMP08670 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
VIMP08670 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC15.42■□□□□ 0.06
VIMP08670 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
VIMP08670 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
VIMP08670 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
VIMP08670 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
VIMP08670 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
VIMP08670 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC15.41■□□□□ 0.06
VIMP08670 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC15.41■□□□□ 0.06
VIMP08670 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
VIMP08670 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
VIMP08670 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms