Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 AC093004.1-201ENST00000508850 424 ntBASIC14.74□□□□□ -0.05
VMP1Q96GC9 SPDYE18-201ENST00000510091 1050 ntBASIC14.74□□□□□ -0.05
VMP1Q96GC9 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 HNRNPUP1-201ENST00000554987 333 ntBASIC14.74□□□□□ -0.05
VMP1Q96GC9 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 AC041040.2-201ENST00000622926 2899 ntBASIC14.74□□□□□ -0.05
VMP1Q96GC9 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
VMP1Q96GC9 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC14.74□□□□□ -0.05
VMP1Q96GC9 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.73□□□□□ -0.05
VMP1Q96GC9 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.73□□□□□ -0.05
VMP1Q96GC9 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.73□□□□□ -0.05
VMP1Q96GC9 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.73□□□□□ -0.05
VMP1Q96GC9 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.73□□□□□ -0.05
VMP1Q96GC9 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 SPDYE19P-201ENST00000338590 713 ntBASIC14.73□□□□□ -0.05
VMP1Q96GC9 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.73□□□□□ -0.05
VMP1Q96GC9 MEP1AP4-201ENST00000423244 1087 ntBASIC14.73□□□□□ -0.05
VMP1Q96GC9 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.73□□□□□ -0.05
VMP1Q96GC9 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
VMP1Q96GC9 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.73□□□□□ -0.05
VMP1Q96GC9 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.73□□□□□ -0.05
VMP1Q96GC9 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.73□□□□□ -0.05
VMP1Q96GC9 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.73□□□□□ -0.05
VMP1Q96GC9 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.73□□□□□ -0.05
VMP1Q96GC9 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.73□□□□□ -0.05
VMP1Q96GC9 AL132655.2-201ENST00000596276 594 ntBASIC14.73□□□□□ -0.05
VMP1Q96GC9 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.73□□□□□ -0.05
VMP1Q96GC9 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 AC005252.3-201ENST00000623855 2258 ntBASIC14.73□□□□□ -0.05
VMP1Q96GC9 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.73□□□□□ -0.05
VMP1Q96GC9 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC14.73□□□□□ -0.05
VMP1Q96GC9 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
VMP1Q96GC9 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
VMP1Q96GC9 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
VMP1Q96GC9 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms