Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC11.32□□□□□ -0.6
CKS2P33552 ETFA-208ENST00000559602 792 ntTSL 3 BASIC11.32□□□□□ -0.6
CKS2P33552 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
CKS2P33552 PNMT-203ENST00000581428 677 ntTSL 2 BASIC11.32□□□□□ -0.6
CKS2P33552 DBP-204ENST00000599385 709 ntTSL 3 BASIC11.32□□□□□ -0.6
CKS2P33552 AL009183.1-201ENST00000603760 355 ntBASIC11.32□□□□□ -0.6
CKS2P33552 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC11.32□□□□□ -0.6
CKS2P33552 KREMEN1-202ENST00000400335 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC11.32□□□□□ -0.6
CKS2P33552 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC11.32□□□□□ -0.6
CKS2P33552 AP001267.2-201ENST00000532619 2086 ntBASIC11.32□□□□□ -0.6
CKS2P33552 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC11.32□□□□□ -0.6
CKS2P33552 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 MYO9B-204ENST00000594824 7595 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
CKS2P33552 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC11.32□□□□□ -0.6
CKS2P33552 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 GIPC3-201ENST00000322315 4335 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 DNMT3B-202ENST00000328111 4336 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 PPP4R3B-205ENST00000616288 4310 ntAPPRIS ALT1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC11.32□□□□□ -0.6
CKS2P33552 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC11.32□□□□□ -0.6
CKS2P33552 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC11.32□□□□□ -0.6
CKS2P33552 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC11.32□□□□□ -0.6
CKS2P33552 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 GFAP-214ENST00000588735 6538 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
CKS2P33552 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC11.32□□□□□ -0.6
CKS2P33552 MST1P2-201ENST00000457982 2291 ntBASIC11.32□□□□□ -0.6
CKS2P33552 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 TOLLIP-202ENST00000317204 3617 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
CKS2P33552 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
CKS2P33552 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
CKS2P33552 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC11.31□□□□□ -0.6
CKS2P33552 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC11.31□□□□□ -0.6
CKS2P33552 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC11.31□□□□□ -0.6
CKS2P33552 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC11.31□□□□□ -0.6
CKS2P33552 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
CKS2P33552 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
CKS2P33552 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC11.31□□□□□ -0.6
CKS2P33552 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC11.31□□□□□ -0.6
CKS2P33552 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC11.31□□□□□ -0.6
CKS2P33552 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC11.31□□□□□ -0.6
CKS2P33552 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC11.31□□□□□ -0.6
CKS2P33552 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC11.31□□□□□ -0.6
CKS2P33552 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC11.31□□□□□ -0.6
CKS2P33552 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
CKS2P33552 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
CKS2P33552 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC11.31□□□□□ -0.6
CKS2P33552 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC11.31□□□□□ -0.6
CKS2P33552 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC11.31□□□□□ -0.6
CKS2P33552 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC11.31□□□□□ -0.6
CKS2P33552 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
CKS2P33552 CCDC74BP1-201ENST00000508880 1123 ntBASIC11.31□□□□□ -0.6
CKS2P33552 FOSL1P1-201ENST00000511041 816 ntBASIC11.31□□□□□ -0.6
CKS2P33552 AC093827.2-201ENST00000512654 315 ntBASIC11.31□□□□□ -0.6
CKS2P33552 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC11.31□□□□□ -0.6
CKS2P33552 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC11.31□□□□□ -0.6
CKS2P33552 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC11.31□□□□□ -0.6
CKS2P33552 IRF8-202ENST00000562492 946 ntTSL 3 BASIC11.31□□□□□ -0.6
CKS2P33552 AC021087.4-201ENST00000563761 564 ntBASIC11.31□□□□□ -0.6
CKS2P33552 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC11.31□□□□□ -0.6
CKS2P33552 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC11.31□□□□□ -0.6
CKS2P33552 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC11.31□□□□□ -0.6
CKS2P33552 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC11.31□□□□□ -0.6
CKS2P33552 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC11.31□□□□□ -0.6
CKS2P33552 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
CKS2P33552 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 CACNB4-210ENST00000539935 8378 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
CKS2P33552 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
CKS2P33552 NBEA-204ENST00000400445 11119 ntAPPRIS P2 TSL 5 BASIC11.31□□□□□ -0.6
CKS2P33552 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms