Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
FOXA1P55317 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.03
FOXA1P55317 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.83□□□□□ -0.03
FOXA1P55317 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
FOXA1P55317 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.03
FOXA1P55317 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
FOXA1P55317 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
FOXA1P55317 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
FOXA1P55317 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.83□□□□□ -0.03
FOXA1P55317 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
FOXA1P55317 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA1P55317 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.83□□□□□ -0.04
FOXA1P55317 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA1P55317 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.83□□□□□ -0.04
FOXA1P55317 AC107890.1-201ENST00000422478 521 ntBASIC14.83□□□□□ -0.04
FOXA1P55317 AC097493.3-201ENST00000509725 367 ntBASIC14.83□□□□□ -0.04
FOXA1P55317 LY6E-204ENST00000519546 971 ntTSL 2 BASIC14.83□□□□□ -0.04
FOXA1P55317 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA1P55317 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC14.83□□□□□ -0.04
FOXA1P55317 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.83□□□□□ -0.04
FOXA1P55317 AC004449.1-201ENST00000564240 433 ntBASIC14.83□□□□□ -0.04
FOXA1P55317 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.83□□□□□ -0.04
FOXA1P55317 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
FOXA1P55317 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA1P55317 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA1P55317 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.83□□□□□ -0.04
FOXA1P55317 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.83□□□□□ -0.04
FOXA1P55317 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA1P55317 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA1P55317 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA1P55317 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
FOXA1P55317 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA1P55317 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA1P55317 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA1P55317 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA1P55317 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA1P55317 AC027601.5-201ENST00000624065 2482 ntBASIC14.83□□□□□ -0.04
FOXA1P55317 PES1-204ENST00000402284 2144 ntTSL 5 BASIC14.83□□□□□ -0.04
FOXA1P55317 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
FOXA1P55317 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA1P55317 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA1P55317 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.83□□□□□ -0.04
FOXA1P55317 AC100757.3-201ENST00000622361 1406 ntBASIC14.83□□□□□ -0.04
FOXA1P55317 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
FOXA1P55317 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA1P55317 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA1P55317 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA1P55317 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.82□□□□□ -0.04
FOXA1P55317 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA1P55317 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA1P55317 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.82□□□□□ -0.04
FOXA1P55317 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA1P55317 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA1P55317 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.82□□□□□ -0.04
FOXA1P55317 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA1P55317 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.82□□□□□ -0.04
FOXA1P55317 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA1P55317 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA1P55317 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
FOXA1P55317 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA1P55317 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA1P55317 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA1P55317 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA1P55317 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.82□□□□□ -0.04
FOXA1P55317 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.82□□□□□ -0.04
FOXA1P55317 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC14.82□□□□□ -0.04
FOXA1P55317 TREML5P-201ENST00000421694 576 ntBASIC14.82□□□□□ -0.04
FOXA1P55317 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.82□□□□□ -0.04
FOXA1P55317 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.82□□□□□ -0.04
FOXA1P55317 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
FOXA1P55317 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.82□□□□□ -0.04
FOXA1P55317 AC015911.4-201ENST00000588022 1070 ntBASIC14.82□□□□□ -0.04
FOXA1P55317 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.82□□□□□ -0.04
FOXA1P55317 AL590560.3-201ENST00000623350 461 ntBASIC14.82□□□□□ -0.04
FOXA1P55317 AL158212.4-201ENST00000624062 1286 ntBASIC14.82□□□□□ -0.04
FOXA1P55317 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
FOXA1P55317 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.82□□□□□ -0.04
FOXA1P55317 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
FOXA1P55317 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.82□□□□□ -0.04
FOXA1P55317 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA1P55317 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA1P55317 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA1P55317 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FOXA1P55317 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
FOXA1P55317 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.81□□□□□ -0.04
FOXA1P55317 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA1P55317 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA1P55317 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.81□□□□□ -0.04
FOXA1P55317 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
FOXA1P55317 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA1P55317 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA1P55317 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA1P55317 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.81□□□□□ -0.04
FOXA1P55317 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
FOXA1P55317 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA1P55317 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA1P55317 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.81□□□□□ -0.04
FOXA1P55317 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA1P55317 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
FOXA1P55317 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms