Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC17.49■□□□□ 0.39
HMGCS2P54868 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC17.49■□□□□ 0.39
HMGCS2P54868 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGCS2P54868 CMC1-204ENST00000423894 549 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGCS2P54868 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC17.49■□□□□ 0.39
HMGCS2P54868 TMEM198B-204ENST00000484016 896 ntBASIC17.49■□□□□ 0.39
HMGCS2P54868 MARK2P5-201ENST00000507649 634 ntBASIC17.49■□□□□ 0.39
HMGCS2P54868 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC17.49■□□□□ 0.39
HMGCS2P54868 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC17.49■□□□□ 0.39
HMGCS2P54868 AC005324.6-201ENST00000587972 613 ntBASIC17.49■□□□□ 0.39
HMGCS2P54868 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC17.49■□□□□ 0.39
HMGCS2P54868 AC138696.2-201ENST00000607376 223 ntBASIC17.49■□□□□ 0.39
HMGCS2P54868 AC079336.7-201ENST00000623428 1078 ntBASIC17.49■□□□□ 0.39
HMGCS2P54868 SNX1-214ENST00000625244 324 ntTSL 5 BASIC17.49■□□□□ 0.39
HMGCS2P54868 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS2P54868 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS2P54868 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS2P54868 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGCS2P54868 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS2P54868 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS2P54868 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS2P54868 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS2P54868 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGCS2P54868 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
HMGCS2P54868 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS2P54868 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS2P54868 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGCS2P54868 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.49■□□□□ 0.39
HMGCS2P54868 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGCS2P54868 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS2P54868 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS2P54868 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS2P54868 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS2P54868 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGCS2P54868 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS2P54868 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGCS2P54868 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS2P54868 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
HMGCS2P54868 SHC1P1-201ENST00000425230 1745 ntBASIC17.48■□□□□ 0.39
HMGCS2P54868 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS2P54868 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS2P54868 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS2P54868 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGCS2P54868 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS2P54868 CDC23-208ENST00000505120 455 ntTSL 3 BASIC17.48■□□□□ 0.39
HMGCS2P54868 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGCS2P54868 HNRNPA1P36-201ENST00000521313 955 ntBASIC17.48■□□□□ 0.39
HMGCS2P54868 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS2P54868 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC17.48■□□□□ 0.39
HMGCS2P54868 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC17.48■□□□□ 0.39
HMGCS2P54868 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC17.48■□□□□ 0.39
HMGCS2P54868 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC17.48■□□□□ 0.39
HMGCS2P54868 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS2P54868 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC17.48■□□□□ 0.39
HMGCS2P54868 AC090164.2-201ENST00000611487 516 ntBASIC17.48■□□□□ 0.39
HMGCS2P54868 AF254983.2-201ENST00000612331 135 ntBASIC17.48■□□□□ 0.39
HMGCS2P54868 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGCS2P54868 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC17.48■□□□□ 0.39
HMGCS2P54868 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS2P54868 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS2P54868 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGCS2P54868 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGCS2P54868 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS2P54868 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.48■□□□□ 0.39
HMGCS2P54868 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGCS2P54868 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS2P54868 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
HMGCS2P54868 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC17.48■□□□□ 0.39
HMGCS2P54868 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS2P54868 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGCS2P54868 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HMGCS2P54868 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGCS2P54868 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS2P54868 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS2P54868 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS2P54868 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS2P54868 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS2P54868 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGCS2P54868 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
HMGCS2P54868 AP005117.1-202ENST00000581724 1908 ntBASIC17.47■□□□□ 0.39
HMGCS2P54868 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
HMGCS2P54868 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
HMGCS2P54868 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS2P54868 AC084018.2-201ENST00000613093 2607 ntBASIC17.47■□□□□ 0.39
HMGCS2P54868 MIR33B-201ENST00000385104 96 ntBASIC17.47■□□□□ 0.39
HMGCS2P54868 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
HMGCS2P54868 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC17.47■□□□□ 0.39
HMGCS2P54868 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
HMGCS2P54868 AC007274.2-201ENST00000421675 662 ntBASIC17.47■□□□□ 0.39
HMGCS2P54868 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC17.47■□□□□ 0.39
HMGCS2P54868 RPS2P36-201ENST00000456516 831 ntBASIC17.47■□□□□ 0.39
HMGCS2P54868 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC17.47■□□□□ 0.39
HMGCS2P54868 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGCS2P54868 AL161670.2-201ENST00000557650 1227 ntBASIC17.47■□□□□ 0.39
HMGCS2P54868 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC17.47■□□□□ 0.39
HMGCS2P54868 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS2P54868 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS2P54868 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
HMGCS2P54868 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGCS2P54868 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms