Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 MVK-214ENST00000629016 1591 ntTSL 5 BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 RN7SKP175-201ENST00000408472 289 ntBASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 PUDPP3-201ENST00000445368 636 ntBASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 E2F3P2-201ENST00000447755 1422 ntBASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC20.1■□□□□ 0.81
CSB-PGBD3P0DP91 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 LINC02199-201ENST00000506655 2702 ntBASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 SRSF10-211ENST00000484146 1089 ntTSL 2 BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 LY6E-208ENST00000520531 490 ntTSL 2 BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 RTN3P1-201ENST00000536295 711 ntBASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 AC103988.2-201ENST00000561804 725 ntBASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 AC018635.2-201ENST00000608625 364 ntBASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CSB-PGBD3P0DP91 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 SHC1P1-201ENST00000425230 1745 ntBASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 INE2-201ENST00000630399 1874 ntBASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 RPL5P21-201ENST00000404620 815 ntBASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 ISCA2P1-201ENST00000425548 448 ntBASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 AL353637.1-201ENST00000451571 732 ntBASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 AC116345.2-201ENST00000512837 523 ntBASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 AL160314.3-201ENST00000556041 767 ntBASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 AP003419.4-201ENST00000616071 517 ntBASIC20.08■□□□□ 0.81
CSB-PGBD3P0DP91 AL139384.1-201ENST00000612143 3047 ntBASIC20.08■□□□□ 0.8
CSB-PGBD3P0DP91 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CSB-PGBD3P0DP91 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC20.08■□□□□ 0.8
CSB-PGBD3P0DP91 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CSB-PGBD3P0DP91 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC20.08■□□□□ 0.8
CSB-PGBD3P0DP91 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CSB-PGBD3P0DP91 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CSB-PGBD3P0DP91 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC20.08■□□□□ 0.8
CSB-PGBD3P0DP91 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC20.08■□□□□ 0.8
CSB-PGBD3P0DP91 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms