Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC28.33■■■□□ 2.13
USP48Q86UV5 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
USP48Q86UV5 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
USP48Q86UV5 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.12
USP48Q86UV5 AL136162.1-201ENST00000607711 1078 ntBASIC28.32■■■□□ 2.12
USP48Q86UV5 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC28.32■■■□□ 2.12
USP48Q86UV5 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
USP48Q86UV5 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC28.32■■■□□ 2.12
USP48Q86UV5 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
USP48Q86UV5 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
USP48Q86UV5 TFPT-201ENST00000391757 774 ntTSL 5 BASIC28.31■■■□□ 2.12
USP48Q86UV5 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC28.31■■■□□ 2.12
USP48Q86UV5 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC28.31■■■□□ 2.12
USP48Q86UV5 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC28.31■■■□□ 2.12
USP48Q86UV5 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
USP48Q86UV5 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
USP48Q86UV5 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC28.31■■■□□ 2.12
USP48Q86UV5 SNAI3-AS1-204ENST00000567997 2048 ntBASIC28.31■■■□□ 2.12
USP48Q86UV5 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
USP48Q86UV5 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
USP48Q86UV5 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
USP48Q86UV5 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
USP48Q86UV5 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
USP48Q86UV5 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC28.3■■■□□ 2.12
USP48Q86UV5 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC28.29■■■□□ 2.12
USP48Q86UV5 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC28.29■■■□□ 2.12
USP48Q86UV5 AF131216.4-201ENST00000638924 1588 ntBASIC28.29■■■□□ 2.12
USP48Q86UV5 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
USP48Q86UV5 HYI-206ENST00000372434 1025 ntTSL 5 BASIC28.29■■■□□ 2.12
USP48Q86UV5 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC28.29■■■□□ 2.12
USP48Q86UV5 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC28.29■■■□□ 2.12
USP48Q86UV5 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC28.29■■■□□ 2.12
USP48Q86UV5 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
USP48Q86UV5 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
USP48Q86UV5 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC28.28■■■□□ 2.12
USP48Q86UV5 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC28.28■■■□□ 2.12
USP48Q86UV5 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC28.27■■■□□ 2.12
USP48Q86UV5 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC28.27■■■□□ 2.12
USP48Q86UV5 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
USP48Q86UV5 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC28.27■■■□□ 2.12
USP48Q86UV5 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC28.27■■■□□ 2.12
USP48Q86UV5 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
USP48Q86UV5 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC28.27■■■□□ 2.12
USP48Q86UV5 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC28.27■■■□□ 2.12
USP48Q86UV5 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC28.27■■■□□ 2.12
USP48Q86UV5 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC28.27■■■□□ 2.12
USP48Q86UV5 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
USP48Q86UV5 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
USP48Q86UV5 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC28.26■■■□□ 2.12
USP48Q86UV5 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC28.26■■■□□ 2.12
USP48Q86UV5 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC28.26■■■□□ 2.12
USP48Q86UV5 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC28.26■■■□□ 2.11
USP48Q86UV5 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
USP48Q86UV5 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
USP48Q86UV5 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC28.26■■■□□ 2.11
USP48Q86UV5 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
USP48Q86UV5 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
USP48Q86UV5 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
USP48Q86UV5 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC28.25■■■□□ 2.11
USP48Q86UV5 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
USP48Q86UV5 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
USP48Q86UV5 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC28.25■■■□□ 2.11
USP48Q86UV5 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC28.25■■■□□ 2.11
USP48Q86UV5 ERN1-208ENST00000606895 2068 ntBASIC28.25■■■□□ 2.11
USP48Q86UV5 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
USP48Q86UV5 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC28.24■■■□□ 2.11
USP48Q86UV5 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC28.24■■■□□ 2.11
USP48Q86UV5 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC28.24■■■□□ 2.11
USP48Q86UV5 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC28.24■■■□□ 2.11
USP48Q86UV5 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC28.24■■■□□ 2.11
USP48Q86UV5 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC28.24■■■□□ 2.11
USP48Q86UV5 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
USP48Q86UV5 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC28.23■■■□□ 2.11
USP48Q86UV5 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
USP48Q86UV5 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC28.23■■■□□ 2.11
USP48Q86UV5 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
USP48Q86UV5 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC28.22■■■□□ 2.11
USP48Q86UV5 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
USP48Q86UV5 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC28.22■■■□□ 2.11
USP48Q86UV5 CLTA-206ENST00000466396 695 ntTSL 2 BASIC28.22■■■□□ 2.11
USP48Q86UV5 AC024257.2-201ENST00000549699 147 ntBASIC28.22■■■□□ 2.11
USP48Q86UV5 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
USP48Q86UV5 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
USP48Q86UV5 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
USP48Q86UV5 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC28.21■■■□□ 2.11
USP48Q86UV5 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
USP48Q86UV5 AL355001.2-201ENST00000620617 1191 ntBASIC28.21■■■□□ 2.11
USP48Q86UV5 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
USP48Q86UV5 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
USP48Q86UV5 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
USP48Q86UV5 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
USP48Q86UV5 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC28.2■■■□□ 2.11
USP48Q86UV5 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
USP48Q86UV5 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
USP48Q86UV5 EDA-201ENST00000338901 1233 ntBASIC28.19■■■□□ 2.1
USP48Q86UV5 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC28.19■■■□□ 2.1
USP48Q86UV5 AC105265.2-201ENST00000467189 838 ntBASIC28.19■■■□□ 2.1
USP48Q86UV5 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
USP48Q86UV5 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
USP48Q86UV5 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms