Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ABCA1O95477 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ABCA1O95477 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
ABCA1O95477 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.3■□□□□ 0.68
ABCA1O95477 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.3■□□□□ 0.68
ABCA1O95477 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
ABCA1O95477 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
ABCA1O95477 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC19.3■□□□□ 0.68
ABCA1O95477 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
ABCA1O95477 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ABCA1O95477 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.3■□□□□ 0.68
ABCA1O95477 AL162430.1-201ENST00000480705 870 ntBASIC19.3■□□□□ 0.68
ABCA1O95477 AL136162.1-201ENST00000607711 1078 ntBASIC19.3■□□□□ 0.68
ABCA1O95477 MIR6722-201ENST00000617286 78 ntBASIC19.3■□□□□ 0.68
ABCA1O95477 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ABCA1O95477 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ABCA1O95477 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
ABCA1O95477 AC097381.1-201ENST00000429019 1296 ntBASIC19.29■□□□□ 0.68
ABCA1O95477 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.29■□□□□ 0.68
ABCA1O95477 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
ABCA1O95477 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
ABCA1O95477 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC19.29■□□□□ 0.68
ABCA1O95477 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
ABCA1O95477 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC19.28■□□□□ 0.68
ABCA1O95477 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA1O95477 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA1O95477 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ABCA1O95477 ERN1-208ENST00000606895 2068 ntBASIC19.27■□□□□ 0.68
ABCA1O95477 PLD4-205ENST00000553861 667 ntTSL 2 BASIC19.27■□□□□ 0.68
ABCA1O95477 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
ABCA1O95477 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.27■□□□□ 0.68
ABCA1O95477 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
ABCA1O95477 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ABCA1O95477 MIR939-201ENST00000401314 82 ntBASIC19.27■□□□□ 0.68
ABCA1O95477 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.27■□□□□ 0.68
ABCA1O95477 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.27■□□□□ 0.68
ABCA1O95477 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
ABCA1O95477 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.27■□□□□ 0.67
ABCA1O95477 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
ABCA1O95477 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA1O95477 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA1O95477 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.26■□□□□ 0.67
ABCA1O95477 GRAMD4P4-201ENST00000613563 1115 ntBASIC19.26■□□□□ 0.67
ABCA1O95477 MIR6821-201ENST00000617625 74 ntBASIC19.26■□□□□ 0.67
ABCA1O95477 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.26■□□□□ 0.67
ABCA1O95477 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ABCA1O95477 FOXO3B-201ENST00000395675 1928 ntBASIC19.26■□□□□ 0.67
ABCA1O95477 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.26■□□□□ 0.67
ABCA1O95477 AL136967.2-201ENST00000623968 743 ntBASIC19.26■□□□□ 0.67
ABCA1O95477 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA1O95477 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA1O95477 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.25■□□□□ 0.67
ABCA1O95477 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA1O95477 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA1O95477 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA1O95477 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA1O95477 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA1O95477 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ABCA1O95477 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.25■□□□□ 0.67
ABCA1O95477 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC19.24■□□□□ 0.67
ABCA1O95477 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19.24■□□□□ 0.67
ABCA1O95477 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ABCA1O95477 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
ABCA1O95477 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
ABCA1O95477 SYT6-210ENST00000641643 1587 ntBASIC19.24■□□□□ 0.67
ABCA1O95477 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ABCA1O95477 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC19.23■□□□□ 0.67
ABCA1O95477 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ABCA1O95477 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.23■□□□□ 0.67
ABCA1O95477 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ABCA1O95477 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC19.23■□□□□ 0.67
ABCA1O95477 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ABCA1O95477 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
ABCA1O95477 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ABCA1O95477 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.23■□□□□ 0.67
ABCA1O95477 DUX4L19-201ENST00000557448 1267 ntBASIC19.23■□□□□ 0.67
ABCA1O95477 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.23■□□□□ 0.67
ABCA1O95477 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC19.23■□□□□ 0.67
ABCA1O95477 CREM-210ENST00000374721 2020 ntTSL 5 BASIC19.22■□□□□ 0.67
ABCA1O95477 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.22■□□□□ 0.67
ABCA1O95477 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC19.22■□□□□ 0.67
ABCA1O95477 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA1O95477 RASA4CP-201ENST00000424092 1398 ntBASIC19.22■□□□□ 0.67
ABCA1O95477 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA1O95477 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA1O95477 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC19.22■□□□□ 0.67
ABCA1O95477 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.22■□□□□ 0.67
ABCA1O95477 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCA1O95477 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.21■□□□□ 0.67
ABCA1O95477 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.21■□□□□ 0.67
ABCA1O95477 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA1O95477 SHF-207ENST00000560540 2062 ntTSL 5 BASIC19.21■□□□□ 0.67
ABCA1O95477 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ABCA1O95477 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.21■□□□□ 0.67
ABCA1O95477 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.21■□□□□ 0.66
ABCA1O95477 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.2■□□□□ 0.66
ABCA1O95477 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
ABCA1O95477 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.2■□□□□ 0.66
ABCA1O95477 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
ABCA1O95477 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms