Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXC12P31275 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXC12P31275 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXC12P31275 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXC12P31275 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXC12P31275 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXC12P31275 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXC12P31275 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXC12P31275 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXC12P31275 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXC12P31275 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 TKT-202ENST00000423516 2075 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXC12P31275 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
HOXC12P31275 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
HOXC12P31275 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
HOXC12P31275 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXC12P31275 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
HOXC12P31275 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXC12P31275 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 MIR1908-201ENST00000410394 80 ntBASIC13.68□□□□□ -0.22
HOXC12P31275 BCYRN1-201ENST00000418539 200 ntBASIC13.68□□□□□ -0.22
HOXC12P31275 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
HOXC12P31275 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC13.68□□□□□ -0.22
HOXC12P31275 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXC12P31275 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
HOXC12P31275 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC13.68□□□□□ -0.22
HOXC12P31275 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
HOXC12P31275 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC13.68□□□□□ -0.22
HOXC12P31275 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC13.68□□□□□ -0.22
HOXC12P31275 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC13.68□□□□□ -0.22
HOXC12P31275 AC015910.1-201ENST00000579400 975 ntBASIC13.68□□□□□ -0.22
HOXC12P31275 RN7SL219P-201ENST00000582872 296 ntBASIC13.68□□□□□ -0.22
HOXC12P31275 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXC12P31275 BTNL10-201ENST00000595971 695 ntBASIC13.68□□□□□ -0.22
HOXC12P31275 MIR8072-201ENST00000614241 80 ntBASIC13.68□□□□□ -0.22
HOXC12P31275 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXC12P31275 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
HOXC12P31275 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXC12P31275 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 AP005117.1-202ENST00000581724 1908 ntBASIC13.68□□□□□ -0.22
HOXC12P31275 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 LOX-206ENST00000639739 1626 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXC12P31275 PEG13-201ENST00000631594 5667 ntBASIC13.68□□□□□ -0.22
HOXC12P31275 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXC12P31275 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC13.68□□□□□ -0.22
HOXC12P31275 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
HOXC12P31275 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXC12P31275 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXC12P31275 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXC12P31275 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXC12P31275 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXC12P31275 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXC12P31275 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXC12P31275 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXC12P31275 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXC12P31275 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
HOXC12P31275 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXC12P31275 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXC12P31275 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXC12P31275 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXC12P31275 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXC12P31275 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXC12P31275 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXC12P31275 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXC12P31275 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXC12P31275 AL442647.2-201ENST00000429864 857 ntBASIC13.67□□□□□ -0.22
HOXC12P31275 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC13.67□□□□□ -0.22
HOXC12P31275 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXC12P31275 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC13.67□□□□□ -0.22
HOXC12P31275 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC13.67□□□□□ -0.22
HOXC12P31275 CD74-212ENST00000524315 584 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXC12P31275 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC13.67□□□□□ -0.22
HOXC12P31275 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC13.67□□□□□ -0.22
HOXC12P31275 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms