Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.32■□□□□ 0.04
MSH3P20585 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
MSH3P20585 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MSH3P20585 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.32■□□□□ 0.04
MSH3P20585 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
MSH3P20585 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSH3P20585 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
MSH3P20585 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MSH3P20585 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.32■□□□□ 0.04
MSH3P20585 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
MSH3P20585 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSH3P20585 AL442647.2-201ENST00000429864 857 ntBASIC15.32■□□□□ 0.04
MSH3P20585 ELK1P1-201ENST00000485699 580 ntBASIC15.32■□□□□ 0.04
MSH3P20585 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC15.32■□□□□ 0.04
MSH3P20585 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC15.32■□□□□ 0.04
MSH3P20585 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC15.32■□□□□ 0.04
MSH3P20585 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC15.32■□□□□ 0.04
MSH3P20585 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSH3P20585 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC15.32■□□□□ 0.04
MSH3P20585 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.32■□□□□ 0.04
MSH3P20585 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSH3P20585 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSH3P20585 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSH3P20585 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSH3P20585 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
MSH3P20585 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
MSH3P20585 INTS4P2-202ENST00000614726 2019 ntBASIC15.32■□□□□ 0.04
MSH3P20585 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
MSH3P20585 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSH3P20585 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.32■□□□□ 0.04
MSH3P20585 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC15.32■□□□□ 0.04
MSH3P20585 AC126365.1-201ENST00000578585 1514 ntBASIC15.32■□□□□ 0.04
MSH3P20585 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.32■□□□□ 0.04
MSH3P20585 MYO15B-237ENST00000642007 4893 ntBASIC15.32■□□□□ 0.04
MSH3P20585 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.31■□□□□ 0.04
MSH3P20585 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.31■□□□□ 0.04
MSH3P20585 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.31■□□□□ 0.04
MSH3P20585 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.31■□□□□ 0.04
MSH3P20585 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC15.31■□□□□ 0.04
MSH3P20585 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC15.31■□□□□ 0.04
MSH3P20585 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.31■□□□□ 0.04
MSH3P20585 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15.31■□□□□ 0.04
MSH3P20585 WASH4P-201ENST00000564273 1246 ntBASIC15.31■□□□□ 0.04
MSH3P20585 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
MSH3P20585 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
MSH3P20585 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.31■□□□□ 0.04
MSH3P20585 AC133539.2-201ENST00000604757 467 ntBASIC15.31■□□□□ 0.04
MSH3P20585 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC15.31■□□□□ 0.04
MSH3P20585 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
MSH3P20585 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
MSH3P20585 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 LINC02228-204ENST00000642115 2962 ntBASIC15.31■□□□□ 0.04
MSH3P20585 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC15.31■□□□□ 0.04
MSH3P20585 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 FAM45BP-202ENST00000592932 1624 ntBASIC15.31■□□□□ 0.04
MSH3P20585 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC15.31■□□□□ 0.04
MSH3P20585 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.31■□□□□ 0.04
MSH3P20585 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
MSH3P20585 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.31■□□□□ 0.04
MSH3P20585 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
MSH3P20585 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
MSH3P20585 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
MSH3P20585 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.3■□□□□ 0.04
MSH3P20585 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
MSH3P20585 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
MSH3P20585 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms