Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC116165.1-201ENST00000611806 668 ntBASIC13.68□□□□□ -0.22
SKA3Q8IX90 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 TP73-209ENST00000603362 1668 ntTSL 5 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
SKA3Q8IX90 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
SKA3Q8IX90 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 C18orf15-201ENST00000623680 2534 ntBASIC13.67□□□□□ -0.22
SKA3Q8IX90 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 AL359183.1-201ENST00000623796 2132 ntBASIC13.67□□□□□ -0.22
SKA3Q8IX90 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 AC023908.3-201ENST00000564211 3047 ntBASIC13.67□□□□□ -0.22
SKA3Q8IX90 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 MIR661-201ENST00000384842 89 ntBASIC13.67□□□□□ -0.22
SKA3Q8IX90 NME2-201ENST00000393183 568 ntTSL 2 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 OSM-203ENST00000403463 464 ntTSL 3 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 SPTLC1P1-201ENST00000447199 261 ntBASIC13.67□□□□□ -0.22
SKA3Q8IX90 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 RN7SL204P-201ENST00000582831 262 ntBASIC13.67□□□□□ -0.22
SKA3Q8IX90 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 AL158212.4-201ENST00000624062 1286 ntBASIC13.67□□□□□ -0.22
SKA3Q8IX90 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 HFE2-206ENST00000634927 506 ntTSL 4 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
SKA3Q8IX90 AC007292.2-201ENST00000593524 1812 ntBASIC13.67□□□□□ -0.22
SKA3Q8IX90 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC13.67□□□□□ -0.22
SKA3Q8IX90 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC13.66□□□□□ -0.22
SKA3Q8IX90 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC13.66□□□□□ -0.22
SKA3Q8IX90 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC13.66□□□□□ -0.22
SKA3Q8IX90 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
SKA3Q8IX90 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC13.66□□□□□ -0.22
SKA3Q8IX90 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
SKA3Q8IX90 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
SKA3Q8IX90 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC13.66□□□□□ -0.22
SKA3Q8IX90 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms