Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 MTX1P1-201ENST00000440904 838 ntBASIC12.96□□□□□ -0.33
ABCA1O95477 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.33
ABCA1O95477 AC243562.2-201ENST00000561247 970 ntBASIC12.96□□□□□ -0.33
ABCA1O95477 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA1O95477 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC12.96□□□□□ -0.33
ABCA1O95477 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC12.96□□□□□ -0.33
ABCA1O95477 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
ABCA1O95477 HARS-202ENST00000415192 1401 ntTSL 2 BASIC12.96□□□□□ -0.33
ABCA1O95477 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
ABCA1O95477 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA1O95477 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC12.96□□□□□ -0.33
ABCA1O95477 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA1O95477 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
ABCA1O95477 MTHFR-217ENST00000641820 1569 ntBASIC12.96□□□□□ -0.33
ABCA1O95477 TNN-203ENST00000622870 3719 ntTSL 5 BASIC12.96□□□□□ -0.33
ABCA1O95477 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
ABCA1O95477 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA1O95477 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
ABCA1O95477 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC12.96□□□□□ -0.33
ABCA1O95477 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA1O95477 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA1O95477 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA1O95477 AL162727.3-201ENST00000635661 2787 ntBASIC12.96□□□□□ -0.33
ABCA1O95477 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC12.96□□□□□ -0.33
ABCA1O95477 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA1O95477 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA1O95477 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA1O95477 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
ABCA1O95477 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC12.96□□□□□ -0.34
ABCA1O95477 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
ABCA1O95477 NBEA-204ENST00000400445 11119 ntAPPRIS P2 TSL 5 BASIC12.96□□□□□ -0.34
ABCA1O95477 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
ABCA1O95477 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC12.96□□□□□ -0.34
ABCA1O95477 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
ABCA1O95477 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
ABCA1O95477 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.34
ABCA1O95477 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC12.96□□□□□ -0.34
ABCA1O95477 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
ABCA1O95477 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC12.96□□□□□ -0.34
ABCA1O95477 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
ABCA1O95477 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC12.96□□□□□ -0.34
ABCA1O95477 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC12.96□□□□□ -0.34
ABCA1O95477 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC12.96□□□□□ -0.34
ABCA1O95477 AC091271.1-201ENST00000611877 1162 ntBASIC12.96□□□□□ -0.34
ABCA1O95477 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC12.96□□□□□ -0.34
ABCA1O95477 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC12.96□□□□□ -0.34
ABCA1O95477 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
ABCA1O95477 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.34
ABCA1O95477 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
ABCA1O95477 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.34
ABCA1O95477 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC12.95□□□□□ -0.34
ABCA1O95477 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA1O95477 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
ABCA1O95477 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC12.95□□□□□ -0.34
ABCA1O95477 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA1O95477 AL607033.1-201ENST00000623900 1599 ntBASIC12.95□□□□□ -0.34
ABCA1O95477 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA1O95477 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA1O95477 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
ABCA1O95477 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC12.95□□□□□ -0.34
ABCA1O95477 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA1O95477 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC12.95□□□□□ -0.34
ABCA1O95477 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC12.95□□□□□ -0.34
ABCA1O95477 AC136604.1-201ENST00000418535 575 ntBASIC12.95□□□□□ -0.34
ABCA1O95477 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
ABCA1O95477 KRT18P64-201ENST00000434946 1219 ntBASIC12.95□□□□□ -0.34
ABCA1O95477 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC12.95□□□□□ -0.34
ABCA1O95477 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA1O95477 SCARNA20.5-201ENST00000516991 142 ntBASIC12.95□□□□□ -0.34
ABCA1O95477 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC12.95□□□□□ -0.34
ABCA1O95477 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC12.95□□□□□ -0.34
ABCA1O95477 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC12.95□□□□□ -0.34
ABCA1O95477 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC12.95□□□□□ -0.34
ABCA1O95477 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
ABCA1O95477 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC12.95□□□□□ -0.34
ABCA1O95477 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA1O95477 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA1O95477 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC12.95□□□□□ -0.34
ABCA1O95477 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC12.95□□□□□ -0.34
ABCA1O95477 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA1O95477 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA1O95477 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC12.95□□□□□ -0.34
ABCA1O95477 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA1O95477 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC12.95□□□□□ -0.34
ABCA1O95477 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA1O95477 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA1O95477 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC12.95□□□□□ -0.34
ABCA1O95477 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC12.95□□□□□ -0.34
ABCA1O95477 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA1O95477 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA1O95477 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA1O95477 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
ABCA1O95477 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC12.95□□□□□ -0.34
ABCA1O95477 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
ABCA1O95477 NUS1P3-201ENST00000423502 862 ntBASIC12.95□□□□□ -0.34
ABCA1O95477 AC004898.1-201ENST00000451057 766 ntBASIC12.95□□□□□ -0.34
ABCA1O95477 AKR7A2P1-201ENST00000460134 915 ntBASIC12.95□□□□□ -0.34
ABCA1O95477 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC12.95□□□□□ -0.34
ABCA1O95477 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC12.95□□□□□ -0.34
ABCA1O95477 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms