Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.8□□□□□ -0.04
SEMA3DO95025 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.8□□□□□ -0.04
SEMA3DO95025 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.8□□□□□ -0.04
SEMA3DO95025 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
SEMA3DO95025 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SEMA3DO95025 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.8□□□□□ -0.04
SEMA3DO95025 AC104457.1-201ENST00000401024 814 ntBASIC14.8□□□□□ -0.04
SEMA3DO95025 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SEMA3DO95025 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.8□□□□□ -0.04
SEMA3DO95025 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.8□□□□□ -0.04
SEMA3DO95025 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.8□□□□□ -0.04
SEMA3DO95025 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.8□□□□□ -0.04
SEMA3DO95025 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC14.8□□□□□ -0.04
SEMA3DO95025 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.8□□□□□ -0.04
SEMA3DO95025 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC14.8□□□□□ -0.04
SEMA3DO95025 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SEMA3DO95025 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.8□□□□□ -0.04
SEMA3DO95025 AC135586.1-201ENST00000539323 574 ntBASIC14.8□□□□□ -0.04
SEMA3DO95025 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.8□□□□□ -0.04
SEMA3DO95025 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.8□□□□□ -0.04
SEMA3DO95025 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.8□□□□□ -0.04
SEMA3DO95025 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.8□□□□□ -0.04
SEMA3DO95025 AL391069.4-201ENST00000609583 481 ntBASIC14.8□□□□□ -0.04
SEMA3DO95025 AC008738.7-201ENST00000609744 511 ntBASIC14.8□□□□□ -0.04
SEMA3DO95025 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.8□□□□□ -0.04
SEMA3DO95025 AL158212.4-201ENST00000624062 1286 ntBASIC14.8□□□□□ -0.04
SEMA3DO95025 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SEMA3DO95025 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC14.8□□□□□ -0.04
SEMA3DO95025 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SEMA3DO95025 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SEMA3DO95025 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SEMA3DO95025 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SEMA3DO95025 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC14.8□□□□□ -0.04
SEMA3DO95025 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.8□□□□□ -0.04
SEMA3DO95025 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.8□□□□□ -0.04
SEMA3DO95025 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SEMA3DO95025 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SEMA3DO95025 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.8□□□□□ -0.04
SEMA3DO95025 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
SEMA3DO95025 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SEMA3DO95025 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
SEMA3DO95025 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SEMA3DO95025 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.8□□□□□ -0.04
SEMA3DO95025 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
SEMA3DO95025 PLEKHG3-202ENST00000394691 4397 ntTSL 5 BASIC14.8□□□□□ -0.04
SEMA3DO95025 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.8□□□□□ -0.04
SEMA3DO95025 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.8□□□□□ -0.04
SEMA3DO95025 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SEMA3DO95025 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SEMA3DO95025 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.8□□□□□ -0.04
SEMA3DO95025 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SEMA3DO95025 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
SEMA3DO95025 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
SEMA3DO95025 AC026748.1-201ENST00000624349 3251 ntBASIC14.79□□□□□ -0.04
SEMA3DO95025 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SEMA3DO95025 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SEMA3DO95025 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
SEMA3DO95025 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SEMA3DO95025 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SEMA3DO95025 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
SEMA3DO95025 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SEMA3DO95025 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC14.79□□□□□ -0.04
SEMA3DO95025 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SEMA3DO95025 GGCT-205ENST00000409436 954 ntTSL 3 BASIC14.79□□□□□ -0.04
SEMA3DO95025 PMS2P2-201ENST00000425039 1128 ntBASIC14.79□□□□□ -0.04
SEMA3DO95025 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.79□□□□□ -0.04
SEMA3DO95025 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SEMA3DO95025 RHOA-206ENST00000454011 889 ntTSL 2 BASIC14.79□□□□□ -0.04
SEMA3DO95025 AL512638.1-201ENST00000457493 794 ntBASIC14.79□□□□□ -0.04
SEMA3DO95025 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.79□□□□□ -0.04
SEMA3DO95025 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SEMA3DO95025 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SEMA3DO95025 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.79□□□□□ -0.04
SEMA3DO95025 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.79□□□□□ -0.04
SEMA3DO95025 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
SEMA3DO95025 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.79□□□□□ -0.04
SEMA3DO95025 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SEMA3DO95025 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.79□□□□□ -0.04
SEMA3DO95025 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
SEMA3DO95025 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC14.79□□□□□ -0.04
SEMA3DO95025 SRD5A3P1-201ENST00000603021 949 ntBASIC14.79□□□□□ -0.04
SEMA3DO95025 AL359258.3-201ENST00000622910 2331 ntBASIC14.79□□□□□ -0.04
SEMA3DO95025 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SEMA3DO95025 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
SEMA3DO95025 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
SEMA3DO95025 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SEMA3DO95025 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC14.79□□□□□ -0.04
SEMA3DO95025 CICP14-201ENST00000629111 2732 ntBASIC14.79□□□□□ -0.04
SEMA3DO95025 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.79□□□□□ -0.04
SEMA3DO95025 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.78□□□□□ -0.04
SEMA3DO95025 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
SEMA3DO95025 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.78□□□□□ -0.04
SEMA3DO95025 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
SEMA3DO95025 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SEMA3DO95025 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
SEMA3DO95025 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms