Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 AC026748.1-201ENST00000624349 3251 ntBASIC15.95■□□□□ 0.14
PCDH9Q9HC56 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 SYS1-203ENST00000414310 795 ntTSL 3 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 AC009407.1-201ENST00000568958 598 ntBASIC15.95■□□□□ 0.14
PCDH9Q9HC56 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PCDH9Q9HC56 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 AMT-204ENST00000427987 1646 ntTSL 5 BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 CICP14-201ENST00000629111 2732 ntBASIC15.94■□□□□ 0.14
PCDH9Q9HC56 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 AL133267.1-201ENST00000398220 340 ntBASIC15.94■□□□□ 0.14
PCDH9Q9HC56 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 INGX-202ENST00000489074 768 ntBASIC15.94■□□□□ 0.14
PCDH9Q9HC56 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 PRR29-204ENST00000577953 565 ntTSL 4 BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PCDH9Q9HC56 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PCDH9Q9HC56 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
PCDH9Q9HC56 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.93■□□□□ 0.14
PCDH9Q9HC56 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PCDH9Q9HC56 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
PCDH9Q9HC56 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PCDH9Q9HC56 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PCDH9Q9HC56 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
PCDH9Q9HC56 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
PCDH9Q9HC56 BTBD7P1-201ENST00000447253 1453 ntBASIC15.93■□□□□ 0.14
PCDH9Q9HC56 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PCDH9Q9HC56 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.93■□□□□ 0.14
PCDH9Q9HC56 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PCDH9Q9HC56 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.93■□□□□ 0.14
PCDH9Q9HC56 HNRNPA1P40-201ENST00000426371 1278 ntBASIC15.93■□□□□ 0.14
PCDH9Q9HC56 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
PCDH9Q9HC56 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC15.93■□□□□ 0.14
PCDH9Q9HC56 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms