Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 PCDHA3-202ENST00000532566 4594 ntBASIC14.7□□□□□ -0.06
SDC1P18827 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
SDC1P18827 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.7□□□□□ -0.06
SDC1P18827 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.7□□□□□ -0.06
SDC1P18827 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.7□□□□□ -0.06
SDC1P18827 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.7□□□□□ -0.06
SDC1P18827 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.7□□□□□ -0.06
SDC1P18827 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC14.7□□□□□ -0.06
SDC1P18827 ZNF890P-202ENST00000530367 1156 ntBASIC14.7□□□□□ -0.06
SDC1P18827 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.7□□□□□ -0.06
SDC1P18827 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.7□□□□□ -0.06
SDC1P18827 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC14.7□□□□□ -0.06
SDC1P18827 AL691403.2-201ENST00000618460 490 ntBASIC14.7□□□□□ -0.06
SDC1P18827 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.7□□□□□ -0.06
SDC1P18827 AC079781.4-201ENST00000641908 219 ntBASIC14.7□□□□□ -0.06
SDC1P18827 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.7□□□□□ -0.06
SDC1P18827 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
SDC1P18827 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.7□□□□□ -0.06
SDC1P18827 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.7□□□□□ -0.06
SDC1P18827 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.7□□□□□ -0.06
SDC1P18827 AC140479.7-201ENST00000636301 2332 ntBASIC14.7□□□□□ -0.06
SDC1P18827 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
SDC1P18827 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 AC005912.2-201ENST00000619492 2400 ntBASIC14.7□□□□□ -0.06
SDC1P18827 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
SDC1P18827 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC14.69□□□□□ -0.06
SDC1P18827 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.69□□□□□ -0.06
SDC1P18827 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.69□□□□□ -0.06
SDC1P18827 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.69□□□□□ -0.06
SDC1P18827 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.69□□□□□ -0.06
SDC1P18827 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC14.69□□□□□ -0.06
SDC1P18827 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.69□□□□□ -0.06
SDC1P18827 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC14.69□□□□□ -0.06
SDC1P18827 AL158211.3-201ENST00000607385 239 ntBASIC14.69□□□□□ -0.06
SDC1P18827 AC093028.1-201ENST00000622998 982 ntBASIC14.69□□□□□ -0.06
SDC1P18827 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.69□□□□□ -0.06
SDC1P18827 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.69□□□□□ -0.06
SDC1P18827 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
SDC1P18827 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
SDC1P18827 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
SDC1P18827 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
SDC1P18827 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 AC100757.3-201ENST00000622361 1406 ntBASIC14.68□□□□□ -0.06
SDC1P18827 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.68□□□□□ -0.06
SDC1P18827 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.68□□□□□ -0.06
SDC1P18827 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.68□□□□□ -0.06
SDC1P18827 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
SDC1P18827 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
SDC1P18827 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms