Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
RFC4P35249 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RFC4P35249 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFC4P35249 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFC4P35249 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC19.15■□□□□ 0.66
RFC4P35249 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC19.15■□□□□ 0.66
RFC4P35249 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RFC4P35249 ISCA2P1-201ENST00000425548 448 ntBASIC19.15■□□□□ 0.66
RFC4P35249 NOC2LP1-201ENST00000450578 752 ntBASIC19.15■□□□□ 0.66
RFC4P35249 RPL18P13-201ENST00000478088 569 ntBASIC19.15■□□□□ 0.66
RFC4P35249 SNORD3B-2-202ENST00000571722 791 ntBASIC19.15■□□□□ 0.66
RFC4P35249 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
RFC4P35249 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC19.15■□□□□ 0.66
RFC4P35249 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC19.15■□□□□ 0.66
RFC4P35249 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC19.15■□□□□ 0.66
RFC4P35249 AC103691.2-201ENST00000618824 433 ntBASIC19.15■□□□□ 0.66
RFC4P35249 COX6A1P2-201ENST00000620597 330 ntBASIC19.15■□□□□ 0.66
RFC4P35249 AC011491.1-203ENST00000637688 543 ntBASIC19.15■□□□□ 0.66
RFC4P35249 AC002472.3-201ENST00000640124 621 ntBASIC19.15■□□□□ 0.66
RFC4P35249 NAP1L6-202ENST00000641404 1222 ntBASIC19.15■□□□□ 0.66
RFC4P35249 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
RFC4P35249 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
RFC4P35249 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RFC4P35249 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC19.15■□□□□ 0.66
RFC4P35249 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFC4P35249 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFC4P35249 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFC4P35249 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFC4P35249 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
RFC4P35249 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
RFC4P35249 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC19.15■□□□□ 0.66
RFC4P35249 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
RFC4P35249 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RFC4P35249 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC19.15■□□□□ 0.66
RFC4P35249 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RFC4P35249 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RFC4P35249 AC127383.1-201ENST00000444697 1800 ntBASIC19.14■□□□□ 0.65
RFC4P35249 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RFC4P35249 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFC4P35249 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC19.14■□□□□ 0.65
RFC4P35249 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
RFC4P35249 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFC4P35249 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFC4P35249 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFC4P35249 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RFC4P35249 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC19.14■□□□□ 0.65
RFC4P35249 AC026316.1-201ENST00000398900 414 ntBASIC19.14■□□□□ 0.65
RFC4P35249 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC19.14■□□□□ 0.65
RFC4P35249 AC098935.1-201ENST00000446057 611 ntBASIC19.14■□□□□ 0.65
RFC4P35249 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC19.14■□□□□ 0.65
RFC4P35249 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC19.14■□□□□ 0.65
RFC4P35249 AC026434.2-201ENST00000506094 1078 ntBASIC19.14■□□□□ 0.65
RFC4P35249 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
RFC4P35249 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
RFC4P35249 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
RFC4P35249 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC19.14■□□□□ 0.65
RFC4P35249 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RFC4P35249 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFC4P35249 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFC4P35249 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFC4P35249 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RFC4P35249 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RFC4P35249 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
RFC4P35249 LINC02447-202ENST00000501888 2146 ntBASIC19.13■□□□□ 0.65
RFC4P35249 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 AP003680.1-201ENST00000598970 3660 ntBASIC19.13■□□□□ 0.65
RFC4P35249 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC19.13■□□□□ 0.65
RFC4P35249 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 ALG1L-201ENST00000340333 805 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 RN7SKP175-201ENST00000408472 289 ntBASIC19.13■□□□□ 0.65
RFC4P35249 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC19.13■□□□□ 0.65
RFC4P35249 AC242376.1-201ENST00000559033 726 ntBASIC19.13■□□□□ 0.65
RFC4P35249 DUX4L46-201ENST00000566845 751 ntBASIC19.13■□□□□ 0.65
RFC4P35249 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC19.13■□□□□ 0.65
RFC4P35249 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 RN7SL736P-201ENST00000613111 269 ntBASIC19.13■□□□□ 0.65
RFC4P35249 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC19.13■□□□□ 0.65
RFC4P35249 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
RFC4P35249 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC19.13■□□□□ 0.65
RFC4P35249 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 SHC1P1-201ENST00000425230 1745 ntBASIC19.13■□□□□ 0.65
RFC4P35249 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC19.13■□□□□ 0.65
RFC4P35249 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
RFC4P35249 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.13■□□□□ 0.65
RFC4P35249 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC19.13■□□□□ 0.65
RFC4P35249 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms