Protein–RNA interactions for Protein: O43707

ACTN4, Alpha-actinin-4, humanhuman

Known RBP Predictions only

Length 911 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN4O43707 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ACTN4O43707 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ACTN4O43707 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ACTN4O43707 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
ACTN4O43707 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC17.34■□□□□ 0.37
ACTN4O43707 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ACTN4O43707 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ACTN4O43707 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ACTN4O43707 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC17.33■□□□□ 0.37
ACTN4O43707 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
ACTN4O43707 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
ACTN4O43707 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
ACTN4O43707 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ACTN4O43707 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
ACTN4O43707 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ACTN4O43707 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC17.33■□□□□ 0.37
ACTN4O43707 ZBTB45P1-201ENST00000452761 1456 ntBASIC17.33■□□□□ 0.37
ACTN4O43707 AC012508.2-201ENST00000567613 1472 ntBASIC17.33■□□□□ 0.37
ACTN4O43707 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC17.33■□□□□ 0.36
ACTN4O43707 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC17.33■□□□□ 0.36
ACTN4O43707 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
ACTN4O43707 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ACTN4O43707 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ACTN4O43707 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.33■□□□□ 0.36
ACTN4O43707 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.33■□□□□ 0.36
ACTN4O43707 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC17.33■□□□□ 0.36
ACTN4O43707 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.33■□□□□ 0.36
ACTN4O43707 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
ACTN4O43707 AC067863.1-201ENST00000494933 530 ntBASIC17.33■□□□□ 0.36
ACTN4O43707 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC17.33■□□□□ 0.36
ACTN4O43707 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.33■□□□□ 0.36
ACTN4O43707 SSH2-210ENST00000582084 560 ntTSL 3 BASIC17.33■□□□□ 0.36
ACTN4O43707 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.33■□□□□ 0.36
ACTN4O43707 AL391069.4-201ENST00000609583 481 ntBASIC17.33■□□□□ 0.36
ACTN4O43707 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC17.33■□□□□ 0.36
ACTN4O43707 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ACTN4O43707 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ACTN4O43707 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC17.33■□□□□ 0.36
ACTN4O43707 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ACTN4O43707 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC17.33■□□□□ 0.36
ACTN4O43707 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
ACTN4O43707 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
ACTN4O43707 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC17.33■□□□□ 0.36
ACTN4O43707 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
ACTN4O43707 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC17.32■□□□□ 0.36
ACTN4O43707 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
ACTN4O43707 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.32■□□□□ 0.36
ACTN4O43707 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.32■□□□□ 0.36
ACTN4O43707 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.32■□□□□ 0.36
ACTN4O43707 HNRNPA3P5-201ENST00000455201 833 ntBASIC17.32■□□□□ 0.36
ACTN4O43707 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
ACTN4O43707 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 AC009407.1-201ENST00000568958 598 ntBASIC17.32■□□□□ 0.36
ACTN4O43707 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.32■□□□□ 0.36
ACTN4O43707 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.32■□□□□ 0.36
ACTN4O43707 5S_rRNA.22-201ENST00000614916 106 ntBASIC17.32■□□□□ 0.36
ACTN4O43707 GPR39-203ENST00000622084 900 ntTSL 5 BASIC17.32■□□□□ 0.36
ACTN4O43707 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC17.32■□□□□ 0.36
ACTN4O43707 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.32■□□□□ 0.36
ACTN4O43707 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
ACTN4O43707 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC17.32■□□□□ 0.36
ACTN4O43707 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC17.32■□□□□ 0.36
ACTN4O43707 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC17.32■□□□□ 0.36
ACTN4O43707 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC17.32■□□□□ 0.36
ACTN4O43707 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
ACTN4O43707 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 AL009178.2-201ENST00000597278 2719 ntBASIC17.32■□□□□ 0.36
ACTN4O43707 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ACTN4O43707 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC17.31■□□□□ 0.36
ACTN4O43707 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ACTN4O43707 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
ACTN4O43707 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ACTN4O43707 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ACTN4O43707 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ACTN4O43707 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
ACTN4O43707 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ACTN4O43707 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ACTN4O43707 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
ACTN4O43707 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ACTN4O43707 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
ACTN4O43707 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
ACTN4O43707 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms