Protein–RNA interactions for Protein: P68431

HIST1H3A, Histone H3.1, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H3AP68431 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC13.53□□□□□ -0.24
HIST1H3AP68431 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H3AP68431 AL589987.1-201ENST00000453380 819 ntBASIC13.53□□□□□ -0.24
HIST1H3AP68431 AC092183.1-201ENST00000469884 875 ntBASIC13.53□□□□□ -0.24
HIST1H3AP68431 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC13.53□□□□□ -0.24
HIST1H3AP68431 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC13.53□□□□□ -0.24
HIST1H3AP68431 GAPDHP40-201ENST00000505218 1006 ntBASIC13.53□□□□□ -0.24
HIST1H3AP68431 SPDYE18-201ENST00000510091 1050 ntBASIC13.53□□□□□ -0.24
HIST1H3AP68431 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H3AP68431 RFPL4AP1-201ENST00000530883 850 ntBASIC13.53□□□□□ -0.24
HIST1H3AP68431 AC135586.1-201ENST00000539323 574 ntBASIC13.53□□□□□ -0.24
HIST1H3AP68431 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC13.53□□□□□ -0.24
HIST1H3AP68431 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H3AP68431 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC13.53□□□□□ -0.24
HIST1H3AP68431 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC13.53□□□□□ -0.24
HIST1H3AP68431 LINC02228-204ENST00000642115 2962 ntBASIC13.53□□□□□ -0.24
HIST1H3AP68431 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
HIST1H3AP68431 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H3AP68431 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC13.53□□□□□ -0.24
HIST1H3AP68431 ZBTB45P1-201ENST00000452761 1456 ntBASIC13.53□□□□□ -0.24
HIST1H3AP68431 AC012508.2-201ENST00000567613 1472 ntBASIC13.53□□□□□ -0.24
HIST1H3AP68431 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC13.53□□□□□ -0.24
HIST1H3AP68431 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H3AP68431 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H3AP68431 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC13.53□□□□□ -0.24
HIST1H3AP68431 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H3AP68431 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC13.53□□□□□ -0.24
HIST1H3AP68431 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H3AP68431 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H3AP68431 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H3AP68431 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.53□□□□□ -0.24
HIST1H3AP68431 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC13.53□□□□□ -0.24
HIST1H3AP68431 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H3AP68431 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H3AP68431 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
HIST1H3AP68431 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
HIST1H3AP68431 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC13.53□□□□□ -0.24
HIST1H3AP68431 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HIST1H3AP68431 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
HIST1H3AP68431 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HIST1H3AP68431 LINC00528-201ENST00000600723 2160 ntBASIC13.52□□□□□ -0.24
HIST1H3AP68431 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
HIST1H3AP68431 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HIST1H3AP68431 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
HIST1H3AP68431 NID2-208ENST00000617139 3827 ntTSL 5 BASIC13.52□□□□□ -0.24
HIST1H3AP68431 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HIST1H3AP68431 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC13.52□□□□□ -0.24
HIST1H3AP68431 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
HIST1H3AP68431 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
HIST1H3AP68431 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
HIST1H3AP68431 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HIST1H3AP68431 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
HIST1H3AP68431 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HIST1H3AP68431 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
HIST1H3AP68431 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
HIST1H3AP68431 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.25
HIST1H3AP68431 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.25
HIST1H3AP68431 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H3AP68431 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC13.52□□□□□ -0.25
HIST1H3AP68431 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC13.52□□□□□ -0.25
HIST1H3AP68431 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H3AP68431 GGCT-205ENST00000409436 954 ntTSL 3 BASIC13.52□□□□□ -0.25
HIST1H3AP68431 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H3AP68431 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC13.52□□□□□ -0.25
HIST1H3AP68431 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H3AP68431 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC13.52□□□□□ -0.25
HIST1H3AP68431 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC13.52□□□□□ -0.25
HIST1H3AP68431 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC13.52□□□□□ -0.25
HIST1H3AP68431 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC13.52□□□□□ -0.25
HIST1H3AP68431 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC13.52□□□□□ -0.25
HIST1H3AP68431 GPX4-206ENST00000588919 803 ntTSL 2 BASIC13.52□□□□□ -0.25
HIST1H3AP68431 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H3AP68431 SERF2-217ENST00000630046 862 ntTSL 5 BASIC13.52□□□□□ -0.25
HIST1H3AP68431 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H3AP68431 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H3AP68431 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H3AP68431 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC13.52□□□□□ -0.25
HIST1H3AP68431 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H3AP68431 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H3AP68431 AP000845.1-201ENST00000581677 2131 ntBASIC13.52□□□□□ -0.25
HIST1H3AP68431 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC13.52□□□□□ -0.25
HIST1H3AP68431 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H3AP68431 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC13.52□□□□□ -0.25
HIST1H3AP68431 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H3AP68431 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H3AP68431 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H3AP68431 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H3AP68431 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H3AP68431 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
HIST1H3AP68431 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
HIST1H3AP68431 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H3AP68431 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H3AP68431 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC13.51□□□□□ -0.25
HIST1H3AP68431 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H3AP68431 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H3AP68431 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
HIST1H3AP68431 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC13.51□□□□□ -0.25
HIST1H3AP68431 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC13.51□□□□□ -0.25
HIST1H3AP68431 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC13.51□□□□□ -0.25
HIST1H3AP68431 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 76.8 ms