Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
AP3B1O00203 AL139400.1-201ENST00000366220 510 ntBASIC15.67■□□□□ 0.1
AP3B1O00203 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
AP3B1O00203 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
AP3B1O00203 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC15.67■□□□□ 0.1
AP3B1O00203 KRT18P64-201ENST00000434946 1219 ntBASIC15.67■□□□□ 0.1
AP3B1O00203 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC15.67■□□□□ 0.1
AP3B1O00203 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC15.67■□□□□ 0.1
AP3B1O00203 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.67■□□□□ 0.1
AP3B1O00203 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
AP3B1O00203 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.67■□□□□ 0.1
AP3B1O00203 SSH2-210ENST00000582084 560 ntTSL 3 BASIC15.67■□□□□ 0.1
AP3B1O00203 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.67■□□□□ 0.1
AP3B1O00203 LINC01115-203ENST00000606068 577 ntBASIC15.67■□□□□ 0.1
AP3B1O00203 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP3B1O00203 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.67■□□□□ 0.1
AP3B1O00203 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
AP3B1O00203 AF228730.6-201ENST00000641497 218 ntBASIC15.67■□□□□ 0.1
AP3B1O00203 AC084121.3-201ENST00000641716 218 ntBASIC15.67■□□□□ 0.1
AP3B1O00203 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP3B1O00203 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP3B1O00203 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
AP3B1O00203 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
AP3B1O00203 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP3B1O00203 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.67■□□□□ 0.1
AP3B1O00203 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
AP3B1O00203 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP3B1O00203 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.67■□□□□ 0.1
AP3B1O00203 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP3B1O00203 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
AP3B1O00203 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
AP3B1O00203 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP3B1O00203 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
AP3B1O00203 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC15.67■□□□□ 0.1
AP3B1O00203 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
AP3B1O00203 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
AP3B1O00203 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP3B1O00203 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP3B1O00203 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP3B1O00203 CICP11-201ENST00000434745 2827 ntBASIC15.67■□□□□ 0.1
AP3B1O00203 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP3B1O00203 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
AP3B1O00203 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.67■□□□□ 0.1
AP3B1O00203 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
AP3B1O00203 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
AP3B1O00203 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.66■□□□□ 0.1
AP3B1O00203 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
AP3B1O00203 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC15.66■□□□□ 0.1
AP3B1O00203 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
AP3B1O00203 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC15.66■□□□□ 0.1
AP3B1O00203 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC15.66■□□□□ 0.1
AP3B1O00203 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.66■□□□□ 0.1
AP3B1O00203 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC15.66■□□□□ 0.1
AP3B1O00203 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.66■□□□□ 0.1
AP3B1O00203 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC15.66■□□□□ 0.1
AP3B1O00203 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 MPI-209ENST00000564003 1195 ntTSL 2 BASIC15.66■□□□□ 0.1
AP3B1O00203 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 AL691403.2-201ENST00000618460 490 ntBASIC15.66■□□□□ 0.1
AP3B1O00203 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.66■□□□□ 0.1
AP3B1O00203 AL109936.8-201ENST00000641772 604 ntBASIC15.66■□□□□ 0.1
AP3B1O00203 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC15.66■□□□□ 0.1
AP3B1O00203 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.66■□□□□ 0.1
AP3B1O00203 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
AP3B1O00203 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.66■□□□□ 0.1
AP3B1O00203 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC15.66■□□□□ 0.1
AP3B1O00203 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.66■□□□□ 0.1
AP3B1O00203 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
AP3B1O00203 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP3B1O00203 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
AP3B1O00203 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP3B1O00203 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP3B1O00203 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC15.65■□□□□ 0.1
AP3B1O00203 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.65■□□□□ 0.1
AP3B1O00203 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.65■□□□□ 0.1
AP3B1O00203 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP3B1O00203 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
AP3B1O00203 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms